Pairwise Alignments

Query, 228 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., two component transcriptional regulator, winged helix family from Synechococcus elongatus PCC 7942

 Score =  151 bits (382), Expect = 1e-41
 Identities = 89/226 (39%), Positives = 135/226 (59%), Gaps = 7/226 (3%)

Query: 4   ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDEI-DLILLDVMMPKLNGMET 62
           IL++DD+  +  +LT  L   G+++  A+DG   LA    E  DLI+LDVM+PKL+G   
Sbjct: 16  ILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVMLPKLDGYGV 75

Query: 63  LKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR---TQ 119
            + LR+    P++ML+A G+  DR+ GL+LGADDYLPKPFS +EL ARI  ILRR   + 
Sbjct: 76  CRELRKLSDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRRLDDSP 135

Query: 120 NGLT-PKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLS 178
           N L+ P +  V+   D+++   +++ + +G+ + LT TEF+LL    + PG  + +  + 
Sbjct: 136 NALSAPSSPGVLRISDVEIDTNRRQVFQRGERVPLTYTEFSLLELLFRQPGRVVPRAEIL 195

Query: 179 IEVLG--KHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGY 222
            E+ G      A  R +D++V+ LR KL   P     I T+RG GY
Sbjct: 196 EELWGYPPRRNADLRVVDVYVARLRSKLEADPRNPELIITVRGTGY 241