Pairwise Alignments

Query, 228 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 244 a.a., two component transcriptional regulator, winged helix family from Synechococcus elongatus PCC 7942

 Score =  152 bits (383), Expect = 7e-42
 Identities = 92/229 (40%), Positives = 134/229 (58%), Gaps = 13/229 (5%)

Query: 4   ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDEI-DLILLDVMMPKLNGMET 62
           IL++DD+  +  +L   L   G+E+  A DGE  L    +   DL++LDVMMPKL+G   
Sbjct: 8   ILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVMMPKLDGYGV 67

Query: 63  LKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQ--- 119
            + LR++   P++MLTA G+  DR+ GLELGADDY+ KPFS +EL ARIR++LRR +   
Sbjct: 68  CQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKSG 127

Query: 120 -NGLTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLS 178
            NG+   +S VI+   I++   K++ Y   + + LT  EF+LL   V   G   ++  + 
Sbjct: 128 ANGI--PSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 185

Query: 179 IEVLG----KHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYL 223
            EV G    +H+    R +D+H+S LR KL + P     I T RG GYL
Sbjct: 186 QEVWGYTPERHVDT--RVVDVHISRLRAKLEDDPGNPELILTARGTGYL 232