Pairwise Alignments

Query, 228 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 257 a.a., two component transcriptional regulator, winged helix family from Synechococcus elongatus PCC 7942

 Score =  149 bits (376), Expect = 5e-41
 Identities = 83/232 (35%), Positives = 136/232 (58%), Gaps = 12/232 (5%)

Query: 2   AHILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGL----------AAVSDEIDLILLD 51
           + IL+++D+  +  ++  VLQ EGF +  A DG   L           +V++  DL++LD
Sbjct: 24  SRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLD 83

Query: 52  VMMPKLNGMETLKRLREKWAT-PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLAR 110
           +M+P +NG++  + LR +  T P+LML+AK  E DRV+GLE+GADDYL KPF  REL+AR
Sbjct: 84  LMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143

Query: 111 IRAILRRTQNGLTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGA 170
            RA+LRR+QN    +   V+  + ++++P +       + L L+  EF LL  F++ P  
Sbjct: 144 CRALLRRSQN-QPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRR 202

Query: 171 TLTKEMLSIEVLGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGY 222
             +++ L  ++ G       + ID+H+  LR+K+   P   + + T+RG GY
Sbjct: 203 VWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGY 254