Pairwise Alignments

Query, 228 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 241 a.a., transcriptional regulatory protein OmpR (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  155 bits (392), Expect = 6e-43
 Identities = 91/229 (39%), Positives = 142/229 (62%), Gaps = 5/229 (2%)

Query: 4   ILLIDDDTELTSLLTEVLQYEGFEI-SQANDGEAGLAAVSDEIDLILLDVMMPKLNGMET 62
           IL++DDD  L +LL   L  +G+++ S AN  +       +   LI+LD+M+P  +G+  
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLSI 67

Query: 63  LKRLREKWAT-PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR-TQN 120
            +RLR++ +T P++MLTAKG+E+DR+IGLELGADDYLPKPF+ RELLARI+A++RR TQ+
Sbjct: 68  CRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTQD 127

Query: 121 --GLTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLS 178
             G   +    I   +  +    +E Y   + + LT+ EFA+L   V  P   L+++ L 
Sbjct: 128 VPGAPAQQEAEIRFGEFSLDLATREMYHGDEAIVLTSGEFAVLKVLVTHPREPLSRDKLM 187

Query: 179 IEVLGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLMVQE 227
               G+  +A +R+ID+ VS LR+ + + P     I+T+ G GY+ V +
Sbjct: 188 NLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPD 236