Pairwise Alignments

Query, 228 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 237 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  147 bits (370), Expect = 2e-40
 Identities = 91/226 (40%), Positives = 132/226 (58%), Gaps = 7/226 (3%)

Query: 1   MAHILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAV-SDEIDLILLDVMMPKLNG 59
           M+ ILL+DDD      LT+VL+ +G E+  A +G  GL  + S   D+++LD++MP+++G
Sbjct: 11  MSRILLVDDDPLFRVWLTDVLKAQGHEVKCAVNGVEGLTCIRSFAPDIVMLDLVMPQMDG 70

Query: 60  METLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQ 119
            E L+    +  TP++ML+A+  E DR+   ELGADD+L KPFS +ELL R++AI RR  
Sbjct: 71  FELLQA--RECMTPIMMLSARDNEEDRIRSYELGADDFLTKPFSIKELLVRLQAIERRLV 128

Query: 120 NGLTPKNSDVIECQDIQVYPGKQEAY---CQGQLLELTTTEFALLTHFVQSPGATLTKEM 176
               P  + V +   IQ     + AY        +ELT TEF L  +  +  G  +TK+ 
Sbjct: 129 QRPKPPMA-VEQVATIQSVRFDETAYKITIGKHAVELTQTEFRLFKYLFERKGQVITKQE 187

Query: 177 LSIEVLGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGY 222
           L   VL K L  FDR +DMH+SN R+KL      +  I T+RG+GY
Sbjct: 188 LQKSVLQKDLGRFDRNLDMHISNTRRKLANTRLPRTLINTVRGQGY 233