Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 739 a.a., primosomal protein N' from Pseudomonas fluorescens FW300-N2E3

 Score =  671 bits (1732), Expect = 0.0
 Identities = 366/739 (49%), Positives = 483/739 (65%), Gaps = 13/739 (1%)

Query: 4   SIARVCLPVPLDKSFDYLIPA-----HLFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPI 58
           +I R+ LP PL + FDY  PA     HL P  G R++VPFGR+ ++GI+  +T  S+ P 
Sbjct: 4   AILRLALPSPLRRLFDYRAPAGVLRAHLHP--GMRLRVPFGRREMIGILVEVTSHSEVPA 61

Query: 59  EQLKSVQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHKE 118
           ++LK   A+LD  P  P  L  L  W SQ+Y + LG+T + ALP  LR+G+ AE    + 
Sbjct: 62  DKLKPALALLDATPPLPASLFKLCLWTSQYYQHSLGDTLSWALPVLLRQGELAEARQERF 121

Query: 119 WRLTALGQEQLMQGVKRGAVKQAQVLHLLQHG-ALSHQTLLDEEVSSTTLKALVEKGWIE 177
           W +T  G +     + R   ++  +  L QH   ++HQ L    +S  +L  L+ K  ++
Sbjct: 122 WSITP-GAKLDDPRIARAPRQREALATLAQHPHGVAHQLLSKLMLSKDSLDLLLAKELVQ 180

Query: 178 CEERKPVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQ-QGFGCFLLEGVTGSGKTEVYL 236
            + RK       +   A+ + P LN EQ  A  A+ +    F  FLL GVTGSGKTEVYL
Sbjct: 181 VDIRKHAPGERHEHWLAQPELP-LNPEQRAAYEAIRAGFDSFHAFLLAGVTGSGKTEVYL 239

Query: 237 NLITPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDK 296
            LI   L  G+QALVL+PEI L PQT+ RF QRFN  + ++HSA+ND ERL +WLAARD 
Sbjct: 240 QLIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALVHSAVNDRERLESWLAARDG 299

Query: 297 VAGIVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLG 356
            A I+IGTRSAL TP    G+II+DEEHD SYKQQ+ LRYHARD+A++RA  ENIPIVLG
Sbjct: 300 EADIIIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLALVRARQENIPIVLG 359

Query: 357 SATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRHL 416
           SATP+LE+LHNA +G+Y  L+L +RAG A   R   LDVK   L+SG+S P+   + + L
Sbjct: 360 SATPSLESLHNAYTGRYGLLRLNERAGGAKQPRFLRLDVKSRPLDSGISGPMQQAIGQTL 419

Query: 417 SAGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQ 476
           +AG QV++FLNRRGF+P L+CH+CGW++ECQRCDA  T HQ S E+RCHHCG    V   
Sbjct: 420 AAGQQVLVFLNRRGFAPTLLCHDCGWMSECQRCDARMTVHQRSGELRCHHCGYVERVPRH 479

Query: 477 CKGCGSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQI 536
           C  CG   L  VG GTE+ E +L  LFP+Y  +R+DRDST RK ++      I+KG+  I
Sbjct: 480 CPKCGKVDLRPVGAGTERAEERLGILFPDYPVLRVDRDSTSRKDAMNQLFATIQKGQPCI 539

Query: 537 LIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVV 596
           L+GTQMLAKGHHFP VTLV++LD DG L+S DFRASER+AQL +QVAGRAGRA +PG+V+
Sbjct: 540 LVGTQMLAKGHHFPRVTLVSILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVI 599

Query: 597 LQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQ 656
           +QTH  +H LL  L  + Y  FA  AL ER+ A LPP++ L+L RAEA+   Q E FL +
Sbjct: 600 IQTHLADHPLLVQLTEQGYFAFAEQALSERRSAGLPPFAHLALLRAEAHKPGQAEGFLDE 659

Query: 657 V-RETLRCNPWFD-SECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQ 714
              E  R     + +   +LGP PAP+ +RAG++R QLLLQ   R  + ++L +   AL+
Sbjct: 660 ACSEAERLLDEHNLTGIELLGPVPAPMERRAGRYRAQLLLQASARAPLHRLLSAWLLALE 719

Query: 715 QLPLASKVRWSIDIDPQDL 733
           Q+P    VRWS+D+DP DL
Sbjct: 720 QMPSGRAVRWSLDVDPVDL 738