Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1199 a.a., transcription-repair coupling factor from Synechocystis sp000284455 PCC 6803

 Score = 55.1 bits (131), Expect = 2e-11
 Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 18/217 (8%)

Query: 183 PVARPWPQELEAKVD-KPRLNQEQAIAIAAVNSQQGFGCF-LLEGVTGSGKTEVYLNLIT 240
           P   PW QELE     +P  +Q +A+     + +       L+ G  G GKTEV +  I 
Sbjct: 629 PPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRAIF 688

Query: 241 PVLARG-EQALVLVPEIGLTPQTINRFRQRFN---VPVEVMHSALNDTERLNAWLAARDK 296
             +  G +Q  +L P   LT Q  +  ++RF    + + +++     +E+       +  
Sbjct: 689 KAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYPITIGLLNRFRTASEKKEILAKLKSG 748

Query: 297 VAGIVIGTRSALLTP--FAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIV 354
              IV+GT+  L T   F  LG++++DEE      Q++ ++    +V V+          
Sbjct: 749 ELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTL-------- 800

Query: 355 LGSATPALETLHNALSGKYHHLQLTQRAGNALPTRNH 391
             +ATP   TL+ +LSG      +T    +  P + H
Sbjct: 801 --TATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTH 835



 Score = 34.7 bits (78), Expect = 3e-05
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 13/99 (13%)

Query: 491 GTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQMLAKGHHFP 550
           G E+L  QL  + P  R + I       +  LES + A   GE  IL+ T ++  G   P
Sbjct: 867 GIEELGGQLRQMVPSAR-IAIGHGQME-ESELESTMLAFNDGEADILVCTTIIEAGLDIP 924

Query: 551 DVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRA 589
            V  + + D               LAQL+ Q+ GR GR+
Sbjct: 925 RVNTIIVEDAQ----------KFGLAQLY-QLRGRVGRS 952