Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 831 a.a., primosomal protein N' from Synechocystis sp000284455 PCC 6803

 Score =  364 bits (935), Expect = e-105
 Identities = 220/580 (37%), Positives = 318/580 (54%), Gaps = 20/580 (3%)

Query: 163 SSTTLKALVEKGWIECEERKPVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQQGFGCFL 222
           S++T+++L +KG +   ER+ + R + Q        P L   Q  A   V   QG+   L
Sbjct: 256 SASTIQSLAKKGLVAIAEREKL-RLFQQPSINASQAPELTPAQKQACQTVLPLQGYHQVL 314

Query: 223 LEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALN 282
           L GVTGSGKTEVYL +    L +G+  LVLVPEIGLTPQ  +RFR RF   V V HS L+
Sbjct: 315 LHGVTGSGKTEVYLQICGDRLGKGQSVLVLVPEIGLTPQLTDRFRARFGNKVAVYHSGLS 374

Query: 283 DTERLNAWLAARDKVAGIVIGTRSALLTPFAKLGIIIVDEEHDSSYKQ-QDSLRYHARDV 341
             E+ + W         IVIGTRSA+ TP   LG+II+DEEHDSS+KQ Q +  YHAR V
Sbjct: 375 SGEKYDTWRQTLLGHEQIVIGTRSAIFTPLPNLGLIILDEEHDSSFKQTQLTPNYHARTV 434

Query: 342 AVMRAHLENIPIVLGSATPALETLHNAL----SGKYHHLQLTQRAGNALPTRNHALDVKG 397
           A  RA LE  P++LGSATP+LE+ H         + H+L+L +R  +        +D++ 
Sbjct: 435 AQRRAELEQCPLILGSATPSLESWHTVHRHQNDPQRHYLELPERVQSRPLPPVQIVDMRA 494

Query: 398 LYLESG---LSAPLIAEMRRHLSAGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYT 454
              +      S  L   +    +   Q +LF+NRRG S  + C  CG++ EC  CD   +
Sbjct: 495 ELKQGNRSIFSRALQTALGELKAKQQQGILFINRRGHSTFVSCRSCGYVLECPNCDVSLS 554

Query: 455 YHQHSNE----MRCHHCGSQRPVLHQCKGCGSTQLVTVGVGTEQLEAQLHTLFPEYRSVR 510
           YH         +RCH+C         C  C S  L   G GT+++   L   FP+ R +R
Sbjct: 555 YHYVQGNGQPLLRCHYCNHAEIQPKVCPECSSPYLKFFGSGTQKVTEALTQEFPDLRWIR 614

Query: 511 IDRDSTRRKGSLESALTAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFR 570
            D D+TRRKG+  + L   ++GE  +L+GTQML KG     +TLV ++  D  L  +D+R
Sbjct: 615 FDSDTTRRKGAHRALLDQFQRGEADLLVGTQMLTKGLDLAQITLVGVVAADSLLNFADYR 674

Query: 571 ASERLAQLFIQVAGRAGRASKPGEVVLQTHHPEHSLLQALLHKDYHHFALTALEERKLAQ 630
           ++ER  Q   QV+GRAGR  +PG+V++QT+ P H ++QA+   +YH F    L +R++  
Sbjct: 675 SAERGFQTLTQVSGRAGRGEEPGQVIIQTYTPRHPVIQAVKTHNYHGFIAQELPQREMLN 734

Query: 631 LPPYSFLSLFRAEANHTAQVEDFLRQVRETLRCNPWFDSECMVLGPTPAPLAKRAGKFRW 690
            PPY  L L R    +  +VE  ++ +   + C         +LGP PA + + A ++RW
Sbjct: 735 YPPYGKLILLRCLGTNEREVEKTIQAI--AVLCEQLLPKTVEILGPAPASILRIAQRYRW 792

Query: 691 QLLLQTPNRTLMQKILQSARPALQQLPLASKVRWSIDIDP 730
           QLL++ P  + ++ IL   R  ++Q+   S V   ID+DP
Sbjct: 793 QLLVKYP--SFIKVILPLER--IKQI-CPSSVYLDIDVDP 827