Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1153 a.a., transcription-repair coupling factor from Synechococcus elongatus PCC 7942

 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 21/220 (9%)

Query: 183 PVARPWPQELEAKVD-KPRLNQEQAIAIAA--VNSQQGFGCFLLEGVTGSGKTEVYLNLI 239
           P  +PW QELE     +P  +Q +A+      + S Q     L+ G  G GKTEV +  I
Sbjct: 588 PPDQPWQQELEESFPYQPTADQLKAVEAVKRDMESPQPMDR-LVCGDVGFGKTEVAVRAI 646

Query: 240 TPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALN----DTERLNAWLAARD 295
              +  G+Q  +L P   LT Q  +  ++RF  P  +    LN     +ER N       
Sbjct: 647 FKAVTAGKQVALLAPTTILTQQHYHTLKERF-APYPIQIGLLNRFRTASERQNIQQRLAT 705

Query: 296 KVAGIVIGTRSALL--TPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPI 353
               +V+GT   L   T F  LG+++VDEE      Q++ +          +A    + +
Sbjct: 706 GELDVVVGTHQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKI----------KALKTQVDV 755

Query: 354 VLGSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHAL 393
           +  SATP   TL+ ALSG      +T    +  P + H +
Sbjct: 756 LTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLM 795