Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 806 a.a., primosome assembly protein PriA from Synechococcus elongatus PCC 7942

 Score =  340 bits (873), Expect = 1e-97
 Identities = 210/524 (40%), Positives = 287/524 (54%), Gaps = 16/524 (3%)

Query: 190 QELEAKVDKPR-LNQEQAIAIAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQ 248
           Q  +   D+PR L   QA A+A +         LL GVTGSGKTEVYL  I P+L +   
Sbjct: 257 QTTDLSADQPRQLTPAQAAALAQIQQAGAGETLLLHGVTGSGKTEVYLQAIAPLLDQQRS 316

Query: 249 ALVLVPEIGLTPQTINRFRQRFNVP-VEVMHSALNDTERLNAWLAARDKVAGIVIGTRSA 307
            LVLVPEIGLTPQ   RF+QRF    + + HS L+D ER +AW       A +VIGTRSA
Sbjct: 317 VLVLVPEIGLTPQLTERFQQRFGGDRLCLYHSGLSDGERYDAWRQMLLGGARVVIGTRSA 376

Query: 308 LLTPFAKLGIIIVDEEHDSSYKQQDSLR-YHARDVAVMRAHLENIPIVLGSATPALET-- 364
           +  P   LG+II+DEEHDSS+KQ+ +   YHAR VA  R+  E  P++LGSATP LET  
Sbjct: 377 VFAPLPNLGLIILDEEHDSSFKQEQTPPCYHARQVAHWRSQWEGCPLLLGSATPDLETWA 436

Query: 365 LHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRHL----SAGN 420
                  +  +L L  R           +D++   L +G  +    ++++ L    + G 
Sbjct: 437 ATQGAEAQTRYLALPDRVEARTLPPVEIVDLRQ-ELANGNRSIFSTKLQQALVDLQARGE 495

Query: 421 QVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQ----HSNEMRCHHCGSQRPVLHQ 476
           Q +LF++RRG S  + C  CG    C  CD   +YH     + + +RCH+C   +    +
Sbjct: 496 QGILFIHRRGHSTFVSCRACGTPIGCPHCDVSLSYHLDQVLNQSLLRCHYCNYTQAQPQR 555

Query: 477 CKGCGSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQI 536
           C  C S  L   G G++++EA++  LFPE    R D D+TR+KG  +  L   R     +
Sbjct: 556 CPACDSPYLKNFGSGSQRVEAEVKRLFPELAVYRYDSDTTRQKGGHQKVLDQFRSQPASL 615

Query: 537 LIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVV 596
           L+GTQML KG   P+VTLV ++  DG L+  DFRASER  Q  IQVAGRAGR  +PG V+
Sbjct: 616 LVGTQMLTKGIDLPEVTLVGVVAADGLLHMPDFRASERSLQTLIQVAGRAGRGDRPGRVI 675

Query: 597 LQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQ 656
           +QT+ P+H +L  LL  +Y  F    L+ER+    PP   L L        A V      
Sbjct: 676 VQTYCPDHPVLTHLLDHNYAQFLGEELQERQAHGYPPAQRLLLLSCRGLEEAVVMTAAEA 735

Query: 657 VRETLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRT 700
           + +  R +P   +   +LGP PA +A+ A + RWQLLL+ P  T
Sbjct: 736 IAD--RLHPILPAGVELLGPAPANIARIARRHRWQLLLKAPPET 777