Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score = 55.1 bits (131), Expect = 2e-11
 Identities = 58/179 (32%), Positives = 81/179 (45%), Gaps = 22/179 (12%)

Query: 203 QEQAIAIAAVNSQQGFGC---FLLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLT 259
           ++Q  +I AV    G G     L+ G  G GKTEV L         G Q  V+VP   L 
Sbjct: 628 EDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVPTTLLA 687

Query: 260 PQTINRFRQRFN-VPVEVMH-SALNDTERLNAWLAARDKVAG---IVIGTRSALLTP--F 312
            Q    F  RF  +P+ +   S L  ++ L   L  ++   G   IV+GT + L +   F
Sbjct: 688 RQHFKTFSDRFRGLPIRIQQASRLVGSKDLA--LTKKEVAEGKTDIVVGTHALLGSSIKF 745

Query: 313 AKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371
           A LG++I+DEE     K ++ L+    DV V+            SATP   TL  AL+G
Sbjct: 746 ANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTL----------SATPIPRTLQLALTG 794