Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 734 a.a., primosome assembly protein PriA from Sinorhizobium meliloti 1021

 Score =  374 bits (959), Expect = e-107
 Identities = 251/735 (34%), Positives = 376/735 (51%), Gaps = 28/735 (3%)

Query: 5   IARVCLPVPLDKSFDYLIPAHLFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLKSV 64
           +  V +P+P  +++ Y +P  +    G  VQVP G + +VG+V           ++LK +
Sbjct: 17  VVPVLVPMPAPRAYSYAVPDGMAVEPGSIVQVPLGPRFVVGVVWDGEDDGGVDPKKLKQI 76

Query: 65  QAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANAL--PGALRKGKAAELTSHKEWRLT 122
           + V D  P+ PD +++ L W + +   P G     AL  P A       E       RLT
Sbjct: 77  EKVFDCPPLGPD-MRAFLDWVAAYTLTPPGLVVRMALRAPTAFDPEPMVEAL-----RLT 130

Query: 123 ALGQEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEVSSTTLKALVEKGWIECEERK 182
            +  E++    +R     +  L   + G L+H       VSS+ +  L  +G  E     
Sbjct: 131 EMRPERMTAARERVLATASDGLSWTRSG-LAHAA----GVSSSVIDGLTSQGVFETVFMP 185

Query: 183 P---VARPWPQELEAKVDKPRLNQEQAIAIAAVNSQQGFGCFLLEGVTGSGKTEVYLNLI 239
           P   VA P P     +++ P+  Q  A  +AAV  ++ F   L++G+TGSGKTEVY   I
Sbjct: 186 PPPVVAAPDPAFAAPRLEGPQ-KQAAADLLAAVEERK-FSVSLIDGITGSGKTEVYFEAI 243

Query: 240 TPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAG 299
              L  G+Q L+L+PEI LT   + RF+ RF       HS L    R   W         
Sbjct: 244 AATLRAGKQVLILLPEIALTASFLERFQDRFGAKPAEWHSDLAPRMREKVWRQVTTGQVR 303

Query: 300 IVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSAT 359
           +V G RSAL  PF  LG+IIVDEEHD +YKQ+D + Y+ARD+AV+R  + N P+VL SAT
Sbjct: 304 VVAGARSALFLPFEDLGLIIVDEEHDPAYKQEDRVFYNARDMAVVRGRIGNFPVVLVSAT 363

Query: 360 PALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESG--LSAPLIAEMRRHLS 417
           P++E+  N   G+Y  + L  R G+A       +D++    E G  LS  L+ ++ + + 
Sbjct: 364 PSVESRVNGEVGRYRPIHLPTRFGDAALPDLGIVDMRRHPPERGGFLSPVLVNQIGKTIG 423

Query: 418 AGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQC 477
              Q +LFLNRRG++P  +C  CG   +C  C ++   H+   +++CHHCG        C
Sbjct: 424 RREQALLFLNRRGYAPLTLCRVCGHRFQCPDCSSWLVEHRFRGQIQCHHCGYSERTPEAC 483

Query: 478 KGCGS-TQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQI 536
             CG+   LV  G G E++  ++   FP+ R++ +  D    K  L   L AI +GE  I
Sbjct: 484 PECGTLDHLVACGPGVERIAEEVERHFPDARTIVLSSDLMGVK-RLRLELEAIARGEADI 542

Query: 537 LIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVV 596
           +IGTQ++AKGH+FP++TLV ++D D  L + D RA+ER  QL  QV GRAGR       +
Sbjct: 543 VIGTQLVAKGHNFPNMTLVGIVDADLGLANGDPRAAERTFQLLSQVTGRAGRTGLKSLGL 602

Query: 597 LQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQ 656
           LQT+ P+H ++QA++  D   F    + ER+ A LPP+  L+     A+     E   R 
Sbjct: 603 LQTYQPQHPVMQAIVSGDSDAFYEREIHERERAVLPPFGRLASVIVSADTRGDAEGHARG 662

Query: 657 VRETLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQL 716
           +R      P  D    +LGP  APLA   G+ R++LL+     + MQ  +++   A  + 
Sbjct: 663 LRNAA---PRVDG-IAILGPAEAPLALIRGRHRFRLLVHGRRNSDMQSFVRAMIAAGPK- 717

Query: 717 PLASKVRWSIDIDPQ 731
                V   +DIDPQ
Sbjct: 718 -ERGSVSVQLDIDPQ 731