Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 68.9 bits (167), Expect = 1e-15
 Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 222 LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRF---NVPVEVMH 278
           L+ G  G GKTEV +      ++ G+Q +VLVP   L  Q    F+ RF    V +EVM 
Sbjct: 629 LVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPTTLLAQQHFENFKDRFADWPVRIEVMS 688

Query: 279 SALNDTERLNAWLAARDKVAGIVIGTRSALLTP--FAKLGIIIVDEEHDSSYKQQDSLRY 336
                 E+     A  +    IVIGT   L T   F  LG++I+DEEH    +Q++ ++ 
Sbjct: 689 RFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTELNFESLGLLIIDEEHRFGVRQKERIK- 747

Query: 337 HARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371
                  MRA   N+ I+  +ATP   TL+ A+SG
Sbjct: 748 ------AMRA---NVDILTLTATPIPRTLNMAMSG 773



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 17/133 (12%)

Query: 493 EQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQMLAKGHHFPDV 552
           E+    +  L PE R V        R+  LE  ++      + +L+ T ++  G   P  
Sbjct: 827 EKAAQDIRELLPEARVVTAHGQMRERE--LERVMSDFYHQRFNVLVCTTIIETGIDVPSA 884

Query: 553 TLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHPEHSLLQALLH 612
             + +   D             LAQL  Q+ GR GR+       L T HP+   + A   
Sbjct: 885 NTILIDRADHF----------GLAQLH-QLRGRVGRSHHQAYAYLMTPHPKLMTVDARKR 933

Query: 613 KDYHHFALTALEE 625
            +    A+ ALE+
Sbjct: 934 LE----AIDALED 942