Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 735 a.a., primosomal protein N' (RefSeq) from Shewanella amazonensis SB2B

 Score =  737 bits (1902), Expect = 0.0
 Identities = 382/734 (52%), Positives = 498/734 (67%), Gaps = 8/734 (1%)

Query: 3   PSIARVCLPVPLDKSFDYLIPAH--LFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQ 60
           P    V LPVP+ +S+ Y +PA     P  G RV+VPFG+Q L+G++ +     + P  Q
Sbjct: 6   PQFVEVALPVPMRRSYSYRLPAQPSTSPCPGKRVKVPFGKQQLIGLITATKDSCELPDAQ 65

Query: 61  LKSVQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHKEWR 120
           +K +  ++DD P   + L  L  W +++Y    G+    ALP ALRKG  A   S    +
Sbjct: 66  IKEIIEIIDDEPALSEPLYKLTLWAARYYFCSQGQMLTQALPVALRKGADAAPKSRTWLK 125

Query: 121 LTALGQEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEVSSTTLKALVEKGWIECEE 180
           LT   +E  +  +KR   +Q     L QH  LS       E+S   LK L +K W++ E+
Sbjct: 126 LTDKAREAGITTLKRAPAQQKLAEMLWQH-PLSLDEFNAMELSKAALKGLEDKDWVQREQ 184

Query: 181 RK-PVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQQGFGCFLLEGVTGSGKTEVYLNLI 239
               +   W   LE      +LN+EQA+A+AA+N+ +G+ C LLEG+TGSGKTEVYL+++
Sbjct: 185 VPVDINLGWRTALELGETPHKLNKEQAVAVAAINAAEGYACALLEGITGSGKTEVYLSVL 244

Query: 240 TPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAG 299
             +L+ G+QAL+LVPEIGLTPQTI+RFR+RF V V V+HS L D +RL+AW A R   A 
Sbjct: 245 EKILSEGKQALILVPEIGLTPQTIDRFRRRFKVEVAVIHSNLTDNQRLDAWRAGRSGEAA 304

Query: 300 IVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSAT 359
           I+IGTRSAL TP A  GIII+DEEHDSS+KQQ+ + YHARD+AVMR HLENIP+VLGSAT
Sbjct: 305 IIIGTRSALFTPMAFPGIIILDEEHDSSFKQQEGVGYHARDLAVMRGHLENIPVVLGSAT 364

Query: 360 PALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRHLSAG 419
           P+LE+L NALSG+Y HL L +RAGNA   R   +D++   L++G+SA L+ EMR HL AG
Sbjct: 365 PSLESLQNALSGRYRHLHLGERAGNAKKVRQGIIDIRNQPLKAGMSAALLNEMRLHLDAG 424

Query: 420 NQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQCKG 479
           NQV+LFLNRRGF+PAL+CHECG + EC RCDA++T HQ   E+RCHHCG+Q  +  QC  
Sbjct: 425 NQVLLFLNRRGFAPALLCHECGHLHECDRCDAFFTVHQKLGEIRCHHCGNQYAIPRQCHN 484

Query: 480 CGSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIG 539
           CGST L+  G+GTEQLE  L   FP+Y  VRIDRD+TR KGSLE+ L AI +G+Y+IL+G
Sbjct: 485 CGSTMLMGQGIGTEQLEQVLKEEFPKYPVVRIDRDTTRLKGSLENHLQAIHRGDYKILVG 544

Query: 540 TQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQT 599
           TQMLAKGHHFPDVTLV LLDVDG+L+S+DFRA ER  QL+ QVAGRAGRA+KPG V+LQT
Sbjct: 545 TQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVAGRAGRAAKPGTVLLQT 604

Query: 600 HHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQVRE 659
           H  ++ +L+ L+HK Y  FA   L ERK A LPP   + L RAEA+     E FL  +  
Sbjct: 605 HQSDNPILRELMHKGYGDFARGQLSERKQAALPPAWHMVLARAEAHRAEDAEAFLAAIAA 664

Query: 660 TLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQLPLA 719
            L  +  F+    V+GP PAP+ ++AGK R QL+ Q   R  +Q+ L++  PA+  LP A
Sbjct: 665 MLPRDRGFE----VIGPLPAPMDRKAGKHRRQLMFQAEQRQGLQQALEAILPAIDLLPEA 720

Query: 720 SKVRWSIDIDPQDL 733
            + RWS+D DPQDL
Sbjct: 721 KRCRWSLDRDPQDL 734