Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 811 a.a., Primosomal protein n (NCBI) from Rhodospirillum rubrum S1H

 Score =  399 bits (1024), Expect = e-115
 Identities = 274/796 (34%), Positives = 380/796 (47%), Gaps = 82/796 (10%)

Query: 5   IARVCLPVPLDKSFDYLIPAHLF-PVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLKS 63
           +  V LP+PL  ++DY +PA +  P +G  V+VP GR+  +G+V       + P E+LK 
Sbjct: 24  VVAVLLPLPLAGAYDYKVPAGMARPAVGTLVRVPLGRREEIGVVWG-AGAGETPPERLKP 82

Query: 64  VQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANAL--PGALRK-----GKAAELTSH 116
           +     + P  P  L++ + W + +   P G     AL  P AL       G        
Sbjct: 83  LIG-FPECPPLPAPLRAFIDWVAAYTVQPPGAVLRMALSVPAALEAPPPALGWRRPSAGQ 141

Query: 117 KEWRLTALGQEQLMQGVKRGAVKQAQVLHLLQHGALSH---QTLLDEEVSSTTLKALVEK 173
           +     A GQ  L  G +    +Q  +  L  H  L         +  V    + A+ + 
Sbjct: 142 RAAGQRAEGQGPLPGGARLSPGRQRVLAVLDDHPGLPFAGADLAREAAVGPAVVAAMAKA 201

Query: 174 GWIECEERKPVARPW-PQELEAKVDKPRLNQEQAIAIAAVNS--QQGFGCFLLEGVTGSG 230
           G +E   R   +  W PQ  +A    P L+ +Q  A   + +   QGF   LLEGVTGSG
Sbjct: 202 GLLEAVTR---SNEWSPQAPDADRPGPLLSADQQAAADGLRTALDQGFSGLLLEGVTGSG 258

Query: 231 KTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAW 290
           KTEVY   I   L RG QALVL+PEI L  Q   RF  RF       HS +    R  AW
Sbjct: 259 KTEVYFEAIAETLRRGRQALVLLPEIALAAQWPRRFADRFGAAPVQWHSQMGAAARRRAW 318

Query: 291 LAARDKVAGIVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLEN 350
            A     A +V+G RSAL  P+  LG+IIVDEEHDS++KQ++ + Y+ARD+AV+RA L  
Sbjct: 319 RAVALGRAPVVVGARSALFLPYPDLGLIIVDEEHDSAFKQEEGVPYNARDMAVVRARLGG 378

Query: 351 IPIVLGSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVK-------------G 397
            P VL SATP+LET+ NA  G+Y HL L +R G A       LD++             G
Sbjct: 379 FPAVLASATPSLETIENARQGRYRHLVLPRRHGGAEMPEITLLDLRRAPPQKWLPTDFAG 438

Query: 398 LYLESGLSAP------------------------------------------LIAEMRRH 415
                GL+AP                                          LI  +   
Sbjct: 439 PGGSEGLAAPGGANDEAEEQKAPPPSPTASPSPTASPSPMARPARLGWLSPPLITAVEET 498

Query: 416 LSAGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLH 475
           L+AG QV+LFLNRRG++P  +C  CG   +C RC A+   H+    +RCHHCG Q+P+  
Sbjct: 499 LAAGEQVLLFLNRRGYAPLTLCRSCGHRLKCPRCTAWLVEHRRDGRLRCHHCGYQQPIPE 558

Query: 476 QCKGCG-STQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEY 534
            C  CG +  L   G G E+L  +    FP+ R      D+        +  T I   + 
Sbjct: 559 TCPACGVADSLAPCGPGVERLAEEAAHRFPKARMDVAASDTVTGPKEAAALATRIANHDI 618

Query: 535 QILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGE 594
            ++IGTQ++AKGHHFP +TLV ++D D  L   D RASER  QL  QVAGRAGRA +PG 
Sbjct: 619 DLIIGTQIMAKGHHFPLITLVGVVDGDLGLTGGDLRASERTHQLLHQVAGRAGRAERPGR 678

Query: 595 VVLQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFL 654
           V++QT  P H +++AL   D   F      ER+   +PP+  L         +A+V+   
Sbjct: 679 VLIQTVDPGHPVMEALASGDPALFLEVEAAERQALAMPPFGRLVALVISGEDSARVQAVA 738

Query: 655 RQVRETLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQ 714
             +       P  D    VLGP PAPLA   G+ R +LLL+      +Q ++   R  L 
Sbjct: 739 AALGRAAPMGPGLD----VLGPVPAPLAMLRGRHRHRLLLKAARGVKVQPVV---RHWLS 791

Query: 715 QLPLASKVRWSIDIDP 730
            + +   V+  +D+DP
Sbjct: 792 LVSIPPGVKVQVDVDP 807