Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 731 a.a., primosomal protein N from Phaeobacter inhibens DSM 17395

 Score =  397 bits (1020), Expect = e-114
 Identities = 267/736 (36%), Positives = 377/736 (51%), Gaps = 42/736 (5%)

Query: 13  PLDKSFDYLIP---AHLFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLKSVQAVLD 69
           PLD+  DY  P    HL    G  V+VP G + ++G++       DF   +L+ V  VLD
Sbjct: 20  PLDRCLDYRAPEGGCHL----GAYVEVPLGPRRVLGVIWG-PGAGDFDSAKLRPVNRVLD 74

Query: 70  DAPVWPDKLQSLLHWCSQFYHYPLGE-----TYANALPGALRKGKAAELTSHKEWRLTAL 124
            AP+  D+++  L   + +   PL       T A  L   +   K    T     R+T  
Sbjct: 75  VAPM-RDEMRQFLTKSADYTLTPLPAMLRLATRAPGLSDPVSMRKVLRPTGQMPDRMTDA 133

Query: 125 GQEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLD-EEVSSTTLKALVEKGWIECEERKP 183
            +  L    + G +            A + + L D   V+++ +K LV++G +  EE  P
Sbjct: 134 RERVLSAVEEYGGL------------AFTAKELADLAGVTTSVVKGLVKQGALR-EEEAP 180

Query: 184 VARPWPQELEAKVDKPRLNQEQAIAIAAVNSQQG---FGCFLLEGVTGSGKTEVYLNLIT 240
              P+P+ L+  +    L ++QA A   +        +G  LL+GVTGSGKTEVYL  + 
Sbjct: 181 RDLPYPR-LDPDLPGKTLTEDQAAAANTLGEGVAGGRYGTTLLKGVTGSGKTEVYLEAVA 239

Query: 241 PVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGI 300
             L  G QALVL+PEI LT + + R  QRF       HS    TER   W       A +
Sbjct: 240 ATLRAGRQALVLLPEIALTAEFLKRVEQRFGATPAEWHSGATMTERRRVWRMVGQGKAQL 299

Query: 301 VIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATP 360
           VIG RSAL  P+  LG+IIVDEEHD+SYKQ + + Y+ARD+AV+RA + +  +VL SATP
Sbjct: 300 VIGARSALFLPYQNLGLIIVDEEHDTSYKQDEGVCYNARDMAVLRAAMCSAQVVLASATP 359

Query: 361 ALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKG--LYLESGLSAPLIAEMRRHLSA 418
           +LET  NA +GKY  L L  R G+A+     A+D++   L   + +S  L   M   +  
Sbjct: 360 SLETWANAEAGKYKRLDLAARFGSAVLPEMRAIDMRAEKLPASTWISPTLKQAMTARIER 419

Query: 419 GNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQCK 478
           G Q +LFLNRRGF+P  +C  CG    C  CD+    H+    + CH CG  +PV   C 
Sbjct: 420 GEQSLLFLNRRGFAPVTICRACGGHVTCDHCDSRMVEHRFMKRLMCHQCGETKPVPDACP 479

Query: 479 GCG-STQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQIL 537
            C    ++  VG G E+L  +   LFPE R   +  D      +L+  +  I  GE  I+
Sbjct: 480 TCQVEGKMAPVGPGIERLGEETAALFPEARIAVLSSDLFASARALKQRIEEIAAGEADII 539

Query: 538 IGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVL 597
           +GTQ++AKGH+FP +TLV ++D D  L  SD RA+ER  QL  QVAGRAGRA KPGE ++
Sbjct: 540 LGTQLVAKGHNFPLLTLVGVIDADLGLQGSDLRAAERTFQLMRQVAGRAGRADKPGEALM 599

Query: 598 QTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQV 657
           QT  PEH +++A+L  D   F      ER+ A +PPY  ++           V D    +
Sbjct: 600 QTFQPEHPVIRAILSGDEEAFWRAEAAERQAAGVPPYGRMAGIVLSGPELPAVMDLGMAL 659

Query: 658 RETLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRT-LMQKILQSARPALQQL 716
                  P       V GP PAP+A+  G+ R +LL++    T L   I +  +PA    
Sbjct: 660 AR--NDGPLRQIGAQVFGPAPAPIARIRGRHRVRLLIKASKGTPLQDAIARWIKPA---- 713

Query: 717 PLASKVRWSIDIDPQD 732
            L   +R S+DIDPQ+
Sbjct: 714 RLKGDLRLSVDIDPQN 729