Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 826 a.a., primosomal protein N' from Pedobacter sp. GW460-11-11-14-LB5

 Score =  337 bits (863), Expect = 2e-96
 Identities = 207/590 (35%), Positives = 323/590 (54%), Gaps = 17/590 (2%)

Query: 152 LSHQTLLDEE-VSSTTLKALVEKGWIECEERKPVARPWPQELEAKVDKPRLNQEQAIAIA 210
           +S + LL+E       LKAL +K  I    ++PV+R    + E  V+   LN+ Q  A+ 
Sbjct: 242 ISKEQLLEESNCGPAALKALTDKD-IFVVMKRPVSRLAAHDEEFSVNF-ELNEGQQKALG 299

Query: 211 AVNSQ-QGFGCFLLEGVTGSGKTEVYLNLITPVLARGE-QALVLVPEIGLTPQTINRFRQ 268
            +N   +     LL GVT SGKT+VY+ LI  ++   + Q L L+PEI LT Q + R ++
Sbjct: 300 QINQYFEEKEVVLLHGVTASGKTQVYIKLIEKIIQNTDGQVLFLLPEIALTTQIVERIKR 359

Query: 269 RFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLTPFAKLGIIIVDEEHDSSY 328
            F   + V HS  N++ER+  W   R     +++G RSA+  PF  L +I+VDEEH+ SY
Sbjct: 360 YFGNSIGVYHSKFNNSERVEIWNKVRTGAYKVILGARSAVFLPFEHLKLIVVDEEHEPSY 419

Query: 329 KQQDSL-RYHARDVAVMRAHLENIPIVLGSATPALETLHNALSGKYHHLQLTQRAGNA-L 386
           KQ D   RY ARD A+   +L    ++LGSATP+LE+ +NAL GKY  +++ +R G   L
Sbjct: 420 KQYDPAPRYQARDAAIYLGYLHQAKVILGSATPSLESYYNALQGKYGLVEMKERFGGVQL 479

Query: 387 PTR---NHALDVKGLYLESGLSAPLIAEMRRHLSAGNQVMLFLNRRGFSPALMCHECGWI 443
           P +   + + + K   + S  S+ LI ++   LS   Q++LF NRRG++  L+C  CG+ 
Sbjct: 480 PNQQVVSISEETKKKTMSSYFSSVLIKDIDLALSKKEQIVLFQNRRGYATILICATCGYT 539

Query: 444 AECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQCKGCGSTQLVTVGVGTEQLEAQLHTLF 503
            +C  CD   TYH+ S ++ CH+CG Q+  ++ C  CGS  +   G GTE++E +L  L+
Sbjct: 540 PKCVNCDVSLTYHKSSGKLHCHYCGYQQSSVNICPACGSVHVEQKGFGTERIEEELRLLY 599

Query: 504 PEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDVDGS 563
           PE    R+D DSTR K  L+  L   ++ +  ILIGTQM+AKG  F ++ L+ +++ D  
Sbjct: 600 PEVTIARLDMDSTRTKNGLQQILNDFQEKKTDILIGTQMVAKGLDFDNLNLIGVINADTL 659

Query: 564 LYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHPEHSLLQALLHKDYHHFALTAL 623
           L   DFRA ER  QL  QVAGRAGR +  G V +QT+  E+ +++ +++ DY       +
Sbjct: 660 LGYPDFRAYERSFQLLAQVAGRAGRRADQGNVCIQTYDAENRIIKQVVNNDYEGMYNDEI 719

Query: 624 EERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQVRETLRCNPWFDSECMVLGPTPAPLAK 683
            ER+    PP+S +     +   +  ++     +   L+    F     VLGP    +++
Sbjct: 720 VEREKFLYPPFSRMIFLYIKHKDSHVLDHAAFTLANILKGK--FGKR--VLGPEQPLVSR 775

Query: 684 RAGKFRWQLLLQTPNRTLMQKILQSARPALQQLPLASK---VRWSIDIDP 730
               +  Q++++    T +QK+  + R  L Q     +   V   ID+DP
Sbjct: 776 VRNLYIKQIIIKADKHTAIQKVKDALRETLTQFNATKEFKGVFTQIDVDP 825



 Score = 41.6 bits (96), Expect = 2e-07
 Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 15/170 (8%)

Query: 8   VCLPVPLDKSFDYLIPAHLFP--VLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLKSVQ 65
           V LP+ L K++ Y +P  L     +G RV V FG+  +   + S        + + K + 
Sbjct: 19  VILPLSLAKNYTYRVPFDLNDQIAVGKRVVVQFGKHKIYTALISGISTVPPTVYEAKYII 78

Query: 66  AVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALR------------KGKAAEL 113
            V+D  PV          W + +Y    G+  A ALP +L+              +  EL
Sbjct: 79  DVVDTEPVITPTQLKFWTWMTNYYMCNEGDVMAAALPASLKLASETILILREDYNEDTEL 138

Query: 114 TSHKEWRLTALGQEQ-LMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEV 162
           T  +E  + AL Q+Q L        + Q  V  ++ H       L+ EEV
Sbjct: 139 TDKEEIIINALKQQQKLTVNDVSKLLGQKTVYPIINHLLDKELVLVAEEV 188