Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score = 61.2 bits (147), Expect = 3e-13
 Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 222 LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRF---NVPVEVMH 278
           L+ G  G GKTEV +      +  G+Q  +LVP   L  Q    F+ RF    + +EVM 
Sbjct: 633 LVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHYENFKDRFADWPIKIEVMS 692

Query: 279 SALNDTERLNAWLAARDKVAGIVIGTRSALLT--PFAKLGIIIVDEEHDSSYKQQDSLRY 336
                 E+             IVIGT   L +   F  LG++I+DEEH    +Q++ ++ 
Sbjct: 693 RFKTAKEQQAVLKQLELGQVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIK- 751

Query: 337 HARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371
                  +RA   NI I+  +ATP   TL+ A+SG
Sbjct: 752 ------ALRA---NIDILTLTATPIPRTLNMAMSG 777



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 493 EQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQMLAKGHHFPDV 552
           E+   ++  L PE R V        R+  LE  ++     +Y +L+ T ++  G   P  
Sbjct: 831 EKRAREIEALLPEARVVTAH--GQMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSA 888

Query: 553 TLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHPEHSLLQALLH 612
             + +   D             LAQL  Q+ GR GR+       L   HP+     A+  
Sbjct: 889 NTIIIERADNF----------GLAQLH-QLRGRVGRSHHQAYAYLMMPHPKRMTKDAIKR 937

Query: 613 KDYHHFALTALEE 625
            +    A+ ALE+
Sbjct: 938 LE----AIGALED 946