Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 731 a.a., primosomal protein N' (RefSeq) from Shewanella loihica PV-4

 Score =  762 bits (1968), Expect = 0.0
 Identities = 402/729 (55%), Positives = 505/729 (69%), Gaps = 8/729 (1%)

Query: 8   VCLPVPLDKSFDYLIP-AHLFPV-LGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLKSVQ 65
           V LPVP+ ++F Y +  A L    +G RV+VPFGRQ L+G+V  L+   D    Q+KSV 
Sbjct: 7   VALPVPMRQAFSYRVKEADLDKAQVGVRVRVPFGRQQLIGLVTGLSQSCDLAPNQIKSVI 66

Query: 66  AVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHKEWRLTALG 125
             LD   V P  L  L  W +++Y   LG+  + ALP ALRKG   E    + WR+TA G
Sbjct: 67  TFLDHEGVLPPSLYKLTQWAARYYFCSLGQMLSQALPVALRKGAEVEAQQLQVWRVTAAG 126

Query: 126 QEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEVSSTTLKALVEKGWIECEERKPVA 185
           QE  +  +KR   ++  +L LL+   LS   L   E S T LKALVE+GWIEC ER+  +
Sbjct: 127 QEADIDLLKRAPAQRKLLLALLET-ELSQDELNALEQSKTALKALVERGWIECIERRIES 185

Query: 186 R-PWPQELEAKVDKPRLNQEQAIAIAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLA 244
              W   LE      +LN EQAIA+A +N QQG+ C LLEG+TGSGKTEVYL L+  VL 
Sbjct: 186 NLSWRDGLELDETPHQLNPEQAIAVAMLNQQQGYHCTLLEGITGSGKTEVYLALLETVLK 245

Query: 245 RGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGT 304
           +G+QAL+LVPEIGLTPQTI+RF++RF V V V+HS L D +RL+AW  AR   A I+IGT
Sbjct: 246 QGKQALILVPEIGLTPQTISRFKRRFKVQVAVIHSGLTDNQRLSAWRLARSGEAAIIIGT 305

Query: 305 RSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALET 364
           RSAL TP    GIII+DEEHD+S+KQQ+ + YHARD+AVMR HLE+IP++LGSATP+LET
Sbjct: 306 RSALFTPMRYPGIIILDEEHDASFKQQEGIGYHARDLAVMRGHLESIPVLLGSATPSLET 365

Query: 365 LHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRHLSAGNQVML 424
           L NALSG+Y HL L  RAG A   R   +D++   L++GLS  L+ EMR HL AGNQV+L
Sbjct: 366 LQNALSGRYQHLSLGSRAGAAEKVRQGIIDIRNQPLKNGLSHGLLNEMRIHLDAGNQVLL 425

Query: 425 FLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQCKGCGSTQ 484
           FLNRRGF+PAL+CHECG + EC RCDA++T HQ   E+RCHHCG+Q  +  QC  CGST 
Sbjct: 426 FLNRRGFAPALLCHECGHLHECDRCDAFFTVHQSLGEIRCHHCGNQYAIPRQCHQCGSTM 485

Query: 485 LVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQMLA 544
           L+  GVGTEQL   L   FP Y  VRIDRD+T RKG+LE+ L AI KGEY+IL+GTQMLA
Sbjct: 486 LMGQGVGTEQLADALAKEFPNYPVVRIDRDTTSRKGALETHLNAIHKGEYKILVGTQMLA 545

Query: 545 KGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHPEH 604
           KGHHFPDVTLV LLDVDG+L+S+DFRA ER  QL+ QV+GRAGRA KPG V+LQTH  ++
Sbjct: 546 KGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVSGRAGRARKPGTVLLQTHQCDN 605

Query: 605 SLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQVRETLRCN 664
            +L+ L+HK Y  FA   LEERK A LPP   + L RAEA+     + FL QV + L   
Sbjct: 606 PILRELMHKGYGEFARGQLEERKQALLPPAWHMLLLRAEAHKAEDADAFLAQVAQLLP-- 663

Query: 665 PWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQLPLASKVRW 724
              D +C ++GP PAP+ ++AGKFR QL+ QT  R L+Q+  + A P ++ LPLA + RW
Sbjct: 664 --QDEQCEIIGPMPAPMDRKAGKFRRQLMFQTKTRGLLQQAFEQALPQIEALPLAKRCRW 721

Query: 725 SIDIDPQDL 733
           S+D DPQDL
Sbjct: 722 SLDRDPQDL 730