Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., primosomal protein N'' from Dechlorosoma suillum PS

 Score =  445 bits (1144), Expect = e-129
 Identities = 251/553 (45%), Positives = 330/553 (59%), Gaps = 16/553 (2%)

Query: 191 ELEAKVDKPRLNQEQAIAIAAV-----NSQQGFGCFLLEGVTGSGKTEVYLNLITPVLAR 245
           ++EA    P L   QA A+AAV      +   F  FLL G+TGSGKTEVYL L+   LA 
Sbjct: 122 KVEAPQVAPELTPGQAEAVAAVLAAGVGTAPRFAPFLLYGITGSGKTEVYLRLVEAALAG 181

Query: 246 GEQALVLVPEIGLTPQTINRFRQRF-NVPVEVMHSALNDTERLNAWLAARDKVAGIVIGT 304
           G QAL+LVPEI LTPQ   R R+RF  V +  +HS L +  R   W AA    A IV+GT
Sbjct: 182 GHQALLLVPEINLTPQLEERVRRRFPGVGLVSLHSELTEAARTRHWKAAFKGEARIVLGT 241

Query: 305 RSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALET 364
           R ++ TP   LG+I+VDEEHD S+KQQD +RY ARDVAV RA    +PIVLGSATP+LET
Sbjct: 242 RLSIFTPLPDLGLIVVDEEHDPSFKQQDGMRYSARDVAVFRAWQRGVPIVLGSATPSLET 301

Query: 365 LHNA----LSGKYHHLQLTQRAGNAL---PTRNHALDVKGLYLESGLSAPLIAEMRRHLS 417
             NA    L  +Y  L L  RA  A    P R   LD +   L+ GLSA L+A ++  L 
Sbjct: 302 WANATGEGLPRRYTLLTLADRANAAASLPPVR--LLDTRREKLQDGLSAALLAALQVRLE 359

Query: 418 AGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQC 477
            G Q ++FLNRRG++P L C  CGWI+ C+RC A    H     +RCHHCG +  +   C
Sbjct: 360 RGEQSLVFLNRRGYAPVLACPSCGWISRCRRCAANLVLHLADRRLRCHHCGFENGIPRAC 419

Query: 478 KGCGSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQIL 537
             CG+  +   G GT++LE  L   FPE R +R+DRDS + +   E+    I  GE  IL
Sbjct: 420 PSCGNQDIHPFGRGTQRLETTLQERFPEARILRVDRDSAKSRKQWEALAEKIHAGEADIL 479

Query: 538 IGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVL 597
           +GTQMLAKGH FP +TLV +   D +L+++D+RA ERL    +QV GRAGRA  PGEV++
Sbjct: 480 VGTQMLAKGHDFPRLTLVGVTGADAALFAADWRAPERLFAQLMQVGGRAGRAELPGEVLI 539

Query: 598 QTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQV 657
           QT HPEH L  AL   D+  FA + LEER+ A  PPYS+  + RAEA       ++L Q 
Sbjct: 540 QTEHPEHPLYGALQQHDFAAFAASQLEERRSAGFPPYSYQVMLRAEAPEMGPALEYLAQA 599

Query: 658 RETLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQLP 717
           R  L  +   +   ++  P P  +A+RA   R QLL ++ +R  +Q  L   RP L+ + 
Sbjct: 600 R-ALGADLNGNGPVLLYDPVPMRMARRANLERAQLLAESTSRPALQAFLAEWRPLLEGIK 658

Query: 718 LASKVRWSIDIDP 730
             S++RW +++DP
Sbjct: 659 APSRLRWHLEVDP 671



 Score = 79.3 bits (194), Expect = 6e-19
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)

Query: 5   IARVCLPVPLDKSFDYLIPAHLFPVLGGRVQVPFGRQTLVGIVQSLT---HQSDFPIEQL 61
           + RV L VPL + FDYL P      +G RV+ PFGR T +G++ ++     + D P+++L
Sbjct: 3   VIRVALDVPLHRQFDYLAPDAQPDDVGRRVRAPFGRGTRIGVITAVLGADEEGDLPLDKL 62

Query: 62  KSVQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRK 107
           K+ + + DD P  P     L  +CS +Y  P+GE    ALP  LR+
Sbjct: 63  KAAEILRDDVPPLPPDWFRLTEFCSSYYQAPIGEVMLAALPVGLRR 108