Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 737 a.a., primosomal protein N' (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  760 bits (1963), Expect = 0.0
 Identities = 392/735 (53%), Positives = 511/735 (69%), Gaps = 14/735 (1%)

Query: 8   VCLPVPLDKSFDYLIPAH--------LFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIE 59
           V LPVP+ ++F Y +  +          P +G RV+VPFGRQ L+G+V ++T   D    
Sbjct: 7   VALPVPMRQNFTYRVKTNEQNDDSPQAKPQIGVRVKVPFGRQQLIGLVTAITDSCDLAPT 66

Query: 60  QLKSVQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHKEW 119
           QLKSV   +DDAP+ P+ L  L  W +++Y    G+    ALP ALRKG  A     + W
Sbjct: 67  QLKSVIEFIDDAPLLPESLYKLTLWAARYYFCSQGQMLTQALPVALRKGLDAAPQKIQYW 126

Query: 120 RLTALGQEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEVSSTTLKALVEKGWIECE 179
           ++T +G     + +KR A  Q ++L  L+  +L+ + ++  E++ T LK L EKGWI   
Sbjct: 127 QITTIGSNIAPETLKR-APAQKKLLEHLKQTSLTQEEVISLELNKTALKTLEEKGWIAQH 185

Query: 180 ER-KPVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQQGFGCFLLEGVTGSGKTEVYLNL 238
           E+   +   W  +LE      RLN+EQA+A+  +  QQG+ C LLEG+TGSGKTEVYL L
Sbjct: 186 EKIAQLNLDWRSQLELDETPHRLNKEQAVAVTVLTQQQGYHCTLLEGITGSGKTEVYLAL 245

Query: 239 ITPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVA 298
           +  +L +G+QAL+LVPEIGLTPQTINRF++RF V V V+HS L D +RL AW  AR   A
Sbjct: 246 LEHILKQGKQALILVPEIGLTPQTINRFKRRFRVNVAVLHSGLTDNQRLEAWRQARCGQA 305

Query: 299 GIVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSA 358
            I+IGTRSAL TP A  G+II+DEEHDSS+KQQ+ + YHARD+AVMR HLE+IP+VLGSA
Sbjct: 306 AIIIGTRSALFTPMAFPGVIILDEEHDSSFKQQEGVGYHARDLAVMRGHLESIPVVLGSA 365

Query: 359 TPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRHLSA 418
           TP+LE+L NALSG+YHHLQL +RAGNA   R   +D+K L L++G+SAPLI E+R HL A
Sbjct: 366 TPSLESLQNALSGRYHHLQLGERAGNAKKVRQGIIDIKNLPLKAGMSAPLINEIRSHLDA 425

Query: 419 GNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQCK 478
           GNQV+LFLNRRGF+PAL+CHECG + EC RCDA++T HQ   E+RCHHCG+Q  +  QC 
Sbjct: 426 GNQVLLFLNRRGFAPALLCHECGHLHECDRCDAFFTVHQSLGEIRCHHCGNQYAIPRQCH 485

Query: 479 GCGSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILI 538
            CGST L+  G+GTEQL   L   FP+Y  VRIDRD+TR KGSLES L+AI KGEY+IL+
Sbjct: 486 NCGSTMLMGQGIGTEQLAEALQLEFPKYPVVRIDRDTTRLKGSLESHLSAIHKGEYKILV 545

Query: 539 GTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQ 598
           GTQMLAKGHHFPDVTLV LLDVDG+L+S+DFRA ER  QL+ QVAGRAGRA+K G V+LQ
Sbjct: 546 GTQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVAGRAGRANKLGTVLLQ 605

Query: 599 THHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQVR 658
           TH  ++ +L+ LLH+ Y  FA + L+ER++A LPP   + L RAEA+     ++FL    
Sbjct: 606 THQSDNPILRDLLHRGYGEFARSQLKERQMALLPPAWHMVLVRAEAHSALDADNFLNSFA 665

Query: 659 ETLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQLPL 718
             L      D E  ++GP PAPL ++AGKFR QL+ Q  +R  +Q+  +   P ++QLP 
Sbjct: 666 SLLP----QDKEFEIIGPMPAPLDRKAGKFRRQLMFQAKHRHRLQQEFERIYPLVEQLPE 721

Query: 719 ASKVRWSIDIDPQDL 733
           A + RWS+D DPQDL
Sbjct: 722 AKRCRWSLDRDPQDL 736