Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 792 a.a., primosomal protein n (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  331 bits (849), Expect = 8e-95
 Identities = 216/622 (34%), Positives = 318/622 (51%), Gaps = 30/622 (4%)

Query: 133 VKRGAVKQAQVLHLLQHGALSHQTLLDEEVSS---TTLKALVEKGWIECE--ERKPVARP 187
           ++  A +QA +L  L     + + +L E + +   T L AL+E+G +  E  +    A  
Sbjct: 179 LRPSAHRQAAILDFLYERGTTSRKVLTETLGTGCTTALGALLERGLVAIEAIDEASCACG 238

Query: 188 WPQELEAKVDKPR---LNQEQAIAI---AAVNSQQGFGCFLLEGVTGSGKTEVYLNLITP 241
             +     +D P+   L +EQ+ A+   AA    +G   ++L G+TGSGKT VYL L   
Sbjct: 239 ISEASSTPLDAPQTLVLTEEQSAAVGNFAAAMDAEGPATWVLYGITGSGKTAVYLELAKM 298

Query: 242 VLARGEQALVLVPEIGLTPQTINRFRQRF-NVPVEVMHSALNDTERLNAW--LAARDKVA 298
            LARG   L+L PE+ L  +            PV + H       R   +  LA      
Sbjct: 299 CLARGRSVLLLAPEVALACKLRRDVANSLPEAPVVLYHGYQTPAVREATFRLLATTRNQP 358

Query: 299 GIVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSA 358
            I++GTRSAL  P   +G +++DEEHDSS+KQ + L Y A++VA  R    N  +VLGSA
Sbjct: 359 RIIVGTRSALFLPVQDIGAVVLDEEHDSSFKQDEGLNYQAKEVAWFRVGQSNGLLVLGSA 418

Query: 359 TPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLI-AEMRRHLS 417
           TP L+T H A  G     +LT R G         +D++ L    G+ AP   A +   L+
Sbjct: 419 TPDLKTWHAAREGVLPAARLTSRVGGGTLPSVELVDIRSLGPTDGILAPATTAALGATLA 478

Query: 418 AGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQC 477
            G Q ++ LNRRG++P + C +CG +A C  CD   TYH+    + CH+CG        C
Sbjct: 479 KGEQAVILLNRRGYAPLMYCLDCGTVARCPHCDIGLTYHKGRERLVCHYCGHSVAYPAVC 538

Query: 478 KGCGSTQLVTVGVGTEQLEAQLHTLFPEY-RSVRIDRDSTRRKGSLESALTAIRKGEYQI 536
             C     + +G GTE+LE  + +  P   R +R+DRDSTRR+G +E  L A  + E Q+
Sbjct: 539 PNCKGMHYLPMGEGTERLEESIASFLPPGGRVLRLDRDSTRRQGRMEEILAAFAREEAQV 598

Query: 537 LIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVV 596
           L+GTQML+KGHHFP VTL  + D D  L   D+RASER  QL +Q +GRAGR   PG+V+
Sbjct: 599 LVGTQMLSKGHHFPKVTLAVVADGDLGLNLPDYRASERTFQLLVQSSGRAGRGELPGKVL 658

Query: 597 LQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAE-----ANHTAQVE 651
           +QT  P H   Q +L  DY  F    +  R+  + PP+  L+L R           A+V 
Sbjct: 659 IQTRDPGHYCWQYVLRGDYEAFFEHEIAIRQRRRYPPFVRLALVRMSYPVDCREGLAEVT 718

Query: 652 DFLRQVRETLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARP 711
               ++R              VLGP PAPL    G+ R+  LL+  +   ++++  +A  
Sbjct: 719 SLAGELRRM-----GSQEGVQVLGPAPAPLPLLRGRKRFNCLLKGADWLGLRRVYGAASG 773

Query: 712 ALQQLPLASKVRWSIDIDPQDL 733
           ++    L+     S+D+DP ++
Sbjct: 774 SVSHRHLS----LSLDLDPVNM 791