Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 727 a.a., primosomal protein N' (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  388 bits (996), Expect = e-112
 Identities = 257/726 (35%), Positives = 378/726 (52%), Gaps = 24/726 (3%)

Query: 13  PLDKSFDYLIPAHLFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLKSVQAVLDDAP 72
           PLD++ DY  P     V G  V+VP G + +VG+V     Q D+   +L+ V  VLD  P
Sbjct: 16  PLDRTLDYKAPEGGC-VQGDFVEVPLGPRKVVGVVWG-PGQGDWDPAKLRRVLRVLDTPP 73

Query: 73  VWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKG-KAAELTSHKEWRLTALGQEQLMQ 131
           +  D++++ L   +++   P+        P  LR   +A  L      R   +  E    
Sbjct: 74  M-RDEMRAFLTRAARYTLTPM--------PAMLRLATRAPGLGDAPSMRKVLVAGEGEPA 124

Query: 132 GVKRGAVKQAQVLHLLQHGALSHQTLLDEE-VSSTTLKALVEKGWIECEERKPVARPWPQ 190
            +    ++    L       ++   L++   VS++ +K LV  G I  E+  P   P+P 
Sbjct: 125 RMTEARMRVMDALAAYGGAPVTQAELVEAAGVSASVIKGLVAAGAIH-EQDTPRDLPYPP 183

Query: 191 ELEAKVDKPRLNQEQAIAIAAVNS--QQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQ 248
              A+  KP   +++A A   ++    + +G  LL+GVTGSGKTEVYL  +   LA+G Q
Sbjct: 184 LDPARPGKPLTPEQEAAAGHLLHGIEAEAYGTTLLKGVTGSGKTEVYLEAVAACLAKGRQ 243

Query: 249 ALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSAL 308
           ALVL+PEI L+ + + R   RF       HS +  TER   W    +  A  V+G RSAL
Sbjct: 244 ALVLLPEIALSAEFLTRVEARFGARPAEWHSGVTMTERRRCWRMVAEGGARFVVGARSAL 303

Query: 309 LTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNA 368
             PF  LG+I+VDEEHD+SYKQ++ + Y+ARD+AV+RA L +  +VL SATP+LE+  NA
Sbjct: 304 FLPFQDLGLIVVDEEHDTSYKQEEGVLYNARDMAVLRASLASAQVVLASATPSLESWANA 363

Query: 369 LSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESG--LSAPLIAEMRRHLSAGNQVMLFL 426
            +GKY  + L  R G A      A+D++   +  G  LS  L   +   L AG Q +LFL
Sbjct: 364 EAGKYLRVDLGARFGAAELPEMAAIDMRAEEVPFGRWLSPSLKRAVTARLEAGEQSLLFL 423

Query: 427 NRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQCKGC-GSTQL 485
           NRRG++P  +C  CG    C+ CDA    H+    + CH CG+ R +   C  C    +L
Sbjct: 424 NRRGYAPVTLCRACGHQIGCETCDARMVEHRFQKRLMCHQCGATRAIPEACPSCEAEGKL 483

Query: 486 VTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQMLAK 545
             VG G E+L  +    FP+ R   +  D      +L++ +  I +G   I+IGTQ++AK
Sbjct: 484 AAVGPGVERLAEEAAEAFPDARIAVLSSDLFGSARALKAQIVEIAEGAADIIIGTQLVAK 543

Query: 546 GHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHPEHS 605
           GH+FP +TLV ++D D  L  SD RA+ER  QL  QVAGRAGRA K GE +LQT+ P+H 
Sbjct: 544 GHNFPLLTLVGVIDADLGLQGSDLRAAERTFQLMRQVAGRAGRAEKRGEALLQTYQPDHP 603

Query: 606 LLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQVRETLRCNP 665
           +++A+L  D   F      ER  A +PPY  ++     +    +V D    +       P
Sbjct: 604 VIRAILTGDEEAFWRAEAGERHAAGMPPYGRMAGIILSSPDLQEVFDLGNALARNHA--P 661

Query: 666 WFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQLPLASKVRWS 725
                  V GP PAP+A+  G+ R +LL+  P    +Q  L      + Q+     +R +
Sbjct: 662 LSAVGATVYGPAPAPIARIRGRHRVRLLVTAPKGVALQDALAR---WVGQVKTGPNLRLA 718

Query: 726 IDIDPQ 731
           +DIDPQ
Sbjct: 719 VDIDPQ 724