Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 719 a.a., primosomal protein N' from Caulobacter crescentus NA1000

 Score =  371 bits (952), Expect = e-107
 Identities = 259/740 (35%), Positives = 381/740 (51%), Gaps = 38/740 (5%)

Query: 3   PSIARVCLPVPLDKSFDYLIPAHLFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLK 62
           P IA V LP+PL ++FDY  P  L   +G  V VP G + + G+V +L   +      LK
Sbjct: 2   PRIASVLLPMPLPEAFDYAEPEGLALAVGDHVTVPLGPRVIRGVVTALRDGTGGN-RPLK 60

Query: 63  SVQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGAL----RKGKAAELTSHKE 118
            V   +DD P+ P  L + + W +++     G   A AL G      +  K   LT  + 
Sbjct: 61  PVLERVDDPPLPPGAL-AFVEWAARYSVDVPGWPLAMALRGLRHPPPKPDKVLVLTGVQP 119

Query: 119 WRLTALGQEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEE-VSSTTLKALVEKGWIE 177
            R+T                 + +V+   +   LS   L     VS+  +K LV++G + 
Sbjct: 120 ARVTPA---------------RLKVMAAAEGTKLSGAALASAAGVSAGVVKGLVDEGVLA 164

Query: 178 CEERKPVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQQ---GFGCFLLEGVTGSGKTEV 234
            +  +P  R  PQ  +  +    LN  QA  +  +       GF   LL+GVTGSGKTEV
Sbjct: 165 VDFVEP-ERGLPQP-DLSLPARALNPGQAACVDVLKDMLESGGFQAALLDGVTGSGKTEV 222

Query: 235 YLNLITPVLARGE-QALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAA 293
           YL  +   L   E Q LVL+PEI LT   + RF QRF       HS ++   R   W A 
Sbjct: 223 YLEAVAEALKDPETQVLVLLPEIALTQAVMARFEQRFGALPAEWHSGVSPPRRRQVWEAV 282

Query: 294 RDKVAGIVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPI 353
               A IV+G RSAL  PF KL +I+VDEEHDSS+KQ++   Y ARD+AV RA +E   +
Sbjct: 283 AGGNARIVVGARSALFLPFRKLRLIVVDEEHDSSFKQEEGFIYQARDLAVARAKIEGASV 342

Query: 354 VLGSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESG--LSAPLIAE 411
           +L SATP+LE+L+NA +G+Y  L+L+ R G A       +D++    E G  LS PLI  
Sbjct: 343 LLASATPSLESLYNAQTGRYRWLRLSARHGAAQLPDIGLVDMRQTPPEPGRWLSPPLIKA 402

Query: 412 MRRHLSAGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQR 471
           M   L  G Q MLFLNRRG++P ++C  CG   +    D++   H+++  + CH  G   
Sbjct: 403 MAVTLQRGEQAMLFLNRRGYAPLVLCKACGEKMKSPDTDSWLVEHRYTGRLVCHLTGFSM 462

Query: 472 PVLHQCKGCGS-TQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIR 530
                C  CG+   LV++G G E++E +   +FP+ R      D+       ++ ++++ 
Sbjct: 463 KKPEACPHCGAKDSLVSIGPGVERVEEEARHIFPDARVAVFSSDTVMDAEGAKALVSSMA 522

Query: 531 KGEYQILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRAS 590
            GE  IL+ TQ  AKGH+FP++TLV ++D D SL   D RA ER  QL  Q AGRAGR  
Sbjct: 523 AGEIDILVATQAAAKGHNFPNLTLVGVVDADLSLRGGDLRAGERTFQLLAQAAGRAGRHE 582

Query: 591 KPGEVVLQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQV 650
           KPG  +LQT+ P+H++++AL  +D   F    +  R+ A LPP+  L+   A     A +
Sbjct: 583 KPGRALLQTYAPDHAVMRALAAQDRDAFVEAEMAMREDAGLPPFGRLAAVIASGPDGAAL 642

Query: 651 EDFLRQVRETLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSAR 710
           + ++  +   +      +    V GP  APLA   G+ R + L++      +Q  + + R
Sbjct: 643 DAYVEALAAVIPNAEGVE----VFGPADAPLALVRGRRRKRFLVRAERNVDLQGFMAAWR 698

Query: 711 PALQQLPLASKVRWSIDIDP 730
            A  ++P  + VR  ID+DP
Sbjct: 699 -ARAKVP--NSVRVVIDVDP 715