Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 818 a.a., primosomal protein N' (replication factor Y) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  341 bits (875), Expect = 8e-98
 Identities = 232/648 (35%), Positives = 346/648 (53%), Gaps = 21/648 (3%)

Query: 78  LQSLLHWCSQFYHYPLGETYANALPGALR-KGKAAELTSHKEWRLTALGQEQLMQGVKRG 136
           ++SLL   + F    L  TY       +R  G A E   H  + + +   +QL   +K  
Sbjct: 161 IKSLLDKEAIFVKEELRRTYKPKTEARVRLAGSADEKRLHILFDILSRAPKQLALLMKY- 219

Query: 137 AVKQAQVLHLLQHGALSHQTLLDEE-VSSTTLKALVEKGWIECEERKPVARPWPQELEAK 195
            V+ + +L       +S + LL    VS + L  LVEK   E    + V R   QE++  
Sbjct: 220 -VECSGILGRETPKEVSKKELLQRAGVSPSILNGLVEKKIFEIYFHE-VGR-LNQEMKEV 276

Query: 196 VDKPRLNQ-EQAIAIAAVNSQQGFGCFLLEGVTGSGKTEVYLNLITPVLARGEQALVLVP 254
           V+   LN+ +Q      V S Q     LL GVT SGKTEVY++LI   + +G+Q L L+P
Sbjct: 277 VELNALNEFQQRAHDEIVQSFQEKNVCLLHGVTSSGKTEVYIHLIEETIRQGKQVLYLLP 336

Query: 255 EIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAAR-DKVAGIVIGTRSALLTPFA 313
           EI LT Q   R ++ F   + + HS   D ER+  W     DK   I++G RS++  PF 
Sbjct: 337 EIALTTQITERLQRVFGSRLGIYHSKFPDAERVEIWRKQLGDKGYDIILGVRSSVFLPFR 396

Query: 314 KLGIIIVDEEHDSSYKQQDSL-RYHARDVAVMRAHLENIPIVLGSATPALETLHNALSGK 372
            LG++IVDEEH+++YKQQD   RYHAR+ A++ A +     +LG+ATP++ET  NA +GK
Sbjct: 397 DLGLVIVDEEHENTYKQQDPAPRYHARNAAIVLAAMYGAKTLLGTATPSIETWQNARNGK 456

Query: 373 YHHLQLTQRAGNALPTRNHALDVKGLYLES---GLSAPLIAE-MRRHLSAGNQVMLFLNR 428
           Y  +QL +R           +D+K L+ +    G  +PL+ + M+  L    QV+LF NR
Sbjct: 457 YGFVQLKERYKEIQLPEIIPVDIKELHRKRRMVGQFSPLLIQYMKEALEQKEQVILFQNR 516

Query: 429 RGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQCKGCGSTQLVTV 488
           RGF+P + C  CGW+ +C+ CD   TYH+  N++ CH+CG    +   C  C  T+LV  
Sbjct: 517 RGFAPMIECRTCGWVPKCKNCDVSLTYHKGINQLTCHYCGYTYQLPKFCPACEGTELVNR 576

Query: 489 GVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQMLAKGHH 548
           G GTE++E  +  LFPE    R+D D+TR + + E  +    +G+  ILIGTQM++KG  
Sbjct: 577 GFGTEKIEDDIKVLFPEAAVARMDLDTTRTRAAYEKIIADFEQGKTDILIGTQMVSKGLD 636

Query: 549 FPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHPEHSLLQ 608
           F  V++V +L+ D  L   DFR+ ER  QL  QVAGRAGR +K G VVLQT   +H ++ 
Sbjct: 637 FDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVAGRAGRKNKRGRVVLQTKSIDHPIIH 696

Query: 609 ALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQVRETLRCNPWFD 668
            ++  +Y       L ER++   PPY  L     + ++ A ++     + E LR    F 
Sbjct: 697 QVIGNNYEEMVDGQLAERQMFHYPPYYRLVYVYLKNHNEALLDQMAAVMAEKLR--TVFG 754

Query: 669 SECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQL 716
           +   VLGP   P+A+    F  +++L+      M +    AR  LQ++
Sbjct: 755 NR--VLGPDKPPVARIQTLFIKKIVLKIEQNAPMGR----ARELLQRI 796



 Score = 53.9 bits (128), Expect = 3e-11
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 19/195 (9%)

Query: 8   VCLPVPLDKSFDYLIPAHLFPV--LGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQLKSVQ 65
           V LP+PL K F Y +P        +G RV VPFGR+     +    H       ++K + 
Sbjct: 7   VILPLPLPKYFTYSLPDECAEEVEIGCRVIVPFGRKKFYTAIVRNVHYCAPTEYEVKDIS 66

Query: 66  AVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHKEWRLTALG 125
           A+LD +P+          W + +Y    G+ Y  ALP  L+      +  + ++   A  
Sbjct: 67  ALLDASPILLSTQFKFWEWLADYYLCTQGDVYKAALPSGLKLESETIVEYNPDFEADAPL 126

Query: 126 QEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEVSS----TTLKALVEKGWIECEER 181
            E           ++ ++L LL   +    T L++E       T +K+L++K  I  +E 
Sbjct: 127 SE-----------REQRILDLLSVDSQQCVTKLEKESGMKNILTVIKSLLDKEAIFVKEE 175

Query: 182 KPVARPWPQELEAKV 196
             + R +  + EA+V
Sbjct: 176 --LRRTYKPKTEARV 188