Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 736 a.a., primosomal protein N' (RefSeq) from Shewanella sp. ANA-3

 Score =  761 bits (1966), Expect = 0.0
 Identities = 392/734 (53%), Positives = 510/734 (69%), Gaps = 13/734 (1%)

Query: 8   VCLPVPLDKSFDYLIP-------AHLFPVLGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQ 60
           V LPVP+ ++F Y +        +   P +G RV+VPFGRQ L+G+V ++T   D    Q
Sbjct: 7   VALPVPMRQNFTYRVDTAEQGEESAQQPQIGIRVKVPFGRQQLIGLVTAITDSCDLAPTQ 66

Query: 61  LKSVQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHKEWR 120
           LKSV   +DDAP+ P+ L  L  W +++Y    G+    ALP ALRKG  A     + W+
Sbjct: 67  LKSVIEFIDDAPLLPESLYKLTLWAARYYFCSQGQMLTQALPVALRKGLDAAPQKIQYWQ 126

Query: 121 LTALGQEQLMQGVKRGAVKQAQVLHLLQHGALSHQTLLDEEVSSTTLKALVEKGWIECEE 180
           +T LG     + +KR A  Q ++L  LQ   L+ + ++  E++   LK L +KGWI   E
Sbjct: 127 ITELGNNIAPETLKR-APAQKRLLERLQQACLTQEDVISLELNKAALKTLEDKGWIARHE 185

Query: 181 R-KPVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQQGFGCFLLEGVTGSGKTEVYLNLI 239
           +   +   W  +LE      RLN+EQA+A+  +  QQG+ C LLEG+TGSGKTEVYL ++
Sbjct: 186 KLAELNLDWRSQLELDEAPHRLNKEQAVAVTLLTQQQGYHCTLLEGITGSGKTEVYLAVL 245

Query: 240 TPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAG 299
             +L +G+QAL+LVPEIGLTPQTINRF++RF V V V+HS L D +RL AW  AR   A 
Sbjct: 246 EHILKQGKQALILVPEIGLTPQTINRFKRRFKVNVAVLHSGLTDNQRLEAWRQARCGQAA 305

Query: 300 IVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSAT 359
           I+IGTRSAL TP A  G+II+DEEHDSS+KQQ+ + YHARD+AVMR HLE+IP++LGSAT
Sbjct: 306 IIIGTRSALFTPMAFPGVIILDEEHDSSFKQQEGVGYHARDLAVMRGHLESIPVILGSAT 365

Query: 360 PALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRHLSAG 419
           P+LETL NALSG+YHHLQL +RAGNA   R   +D+K L L++G+SAPLI E+R HL AG
Sbjct: 366 PSLETLQNALSGRYHHLQLGERAGNAKKVRQGIIDIKNLPLKAGMSAPLINEIRSHLEAG 425

Query: 420 NQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLHQCKG 479
           NQV+LFLNRRGF+PAL+CHECG + EC RCDA++T HQ   E+RCHHCG+Q  +  QC  
Sbjct: 426 NQVLLFLNRRGFAPALLCHECGHLHECDRCDAFFTVHQSLGEIRCHHCGNQYAIPRQCHN 485

Query: 480 CGSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIG 539
           CGST L+  G+GTEQL   L   FP+Y  VRIDRD+TR KGSLES L+AI KGEY+IL+G
Sbjct: 486 CGSTMLMGQGIGTEQLAEALQQEFPKYPVVRIDRDTTRLKGSLESHLSAIHKGEYKILVG 545

Query: 540 TQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQT 599
           TQMLAKGHHFPDVTLV LLDVDG+L+S+DFRA ER  QL+ QVAGRAGRA+KPG V+LQT
Sbjct: 546 TQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVAGRAGRANKPGTVLLQT 605

Query: 600 HHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLRQVRE 659
           H  ++ +L+ LLH+ Y  FA + L+ER++A LPP   + L RAEA+     ++FL     
Sbjct: 606 HQSDNPILRDLLHRGYGEFARSQLKERQMALLPPAWHMVLVRAEAHSAVDADNFLNAFAA 665

Query: 660 TLRCNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPALQQLPLA 719
            L      D E  ++GP PAPL ++AGKFR QL+ Q  +R  +Q+  +   P ++QLP A
Sbjct: 666 LLP----QDKEFEIIGPMPAPLDRKAGKFRRQLMFQAKHRHRLQQEFERIYPLVEQLPEA 721

Query: 720 SKVRWSIDIDPQDL 733
            + RWS+D DPQDL
Sbjct: 722 KRCRWSLDRDPQDL 735