Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella sp. ANA-3

 Score = 66.6 bits (161), Expect = 7e-15
 Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 201 LNQEQAIAIAAVNSQQGFGCF-LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLT 259
           ++QE AI     + Q       L+ G  G GKTEV +      +  G+Q +VLVP   L 
Sbjct: 613 VDQESAIHAVLADMQSPVAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLA 672

Query: 260 PQTINRFRQRF---NVPVEVMHSALNDTERLNAWLAARDKVAGIVIGTRSALLT--PFAK 314
            Q    F+ RF    V +EVM       E+        +    IVIGT   L +   F  
Sbjct: 673 QQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKLLEEGKVDIVIGTHKLLQSEAKFEN 732

Query: 315 LGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371
           LG++I+DEEH    +Q++ ++        +RA   N+ I+  +ATP   TL+ A+SG
Sbjct: 733 LGLLIIDEEHRFGVRQKEKIK-------ALRA---NVDILTLTATPIPRTLNMAMSG 779



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 493 EQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGTQMLAKGHHFPDV 552
           E+    + TL PE R V        R+  LE  ++      + +L+ T ++  G   P  
Sbjct: 833 EKCAQDISTLLPEARVVVAH--GQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSA 890

Query: 553 TLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHPEHSLLQALLH 612
             + +   D          +  LAQL  Q+ GR GR+       L T HP+     A   
Sbjct: 891 NTIIIERAD----------TFGLAQLH-QLRGRVGRSHHQAYAYLMTPHPKRMTSDARKR 939

Query: 613 KDYHHFALTALEE 625
            +    A+ ALE+
Sbjct: 940 LE----AIDALED 948