Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Ribose operon repressor from Pseudomonas fluorescens FW300-N2E2

 Score =  210 bits (535), Expect = 4e-59
 Identities = 119/333 (35%), Positives = 187/333 (56%), Gaps = 1/333 (0%)

Query: 1   MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESK 60
           MAT+KDVA LAG+S  TVS  +     VS   R +VE A+    Y P+++AR+L+   + 
Sbjct: 1   MATIKDVAALAGISYTTVSHVVNKTRPVSEEVRLKVEAAIERLDYVPSAVARSLKAKTTA 60

Query: 61  TIVAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGML 120
           TI  +VP+  +PYF+E+ RGIED    +GY V+L +S     ++ S++ ++  K+ DG++
Sbjct: 61  TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNPDKQRSYLRVLLEKRIDGLI 120

Query: 121 LLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKRIA 180
                    +++       PMV+       ++   V ID+   A+ A  +L +LGH+ IA
Sbjct: 121 FASAGGDVGLAEGLSNVRTPMVIVDRGLEGVDADLVRIDHEYGAYLATRHLLELGHRDIA 180

Query: 181 QISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA 240
            I GP + ++ Q R  GY +AL+ AGI +        DFT   G +A  QLL + + P+A
Sbjct: 181 FIGGPANTSVAQMRLAGYCRALKEAGIELPVERMLESDFTSTGGYRAAAQLL-VQQPPSA 239

Query: 241 IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAM 300
           IF  ND + IG ++ A    +RVP +LSV+GFDDIQ ++Y  P LTT+ Q   ++G  A 
Sbjct: 240 IFAANDMIGIGVLRAAAERNVRVPSELSVIGFDDIQMSRYVYPALTTVGQSILQLGEMAA 299

Query: 301 LMMLELLRGHDVRAGSRLLETKLVVRESAAPPS 333
            ++L  +    +    R++   +V+RES AP S
Sbjct: 300 EVLLRRIATPGLATEQRIVTPSIVLRESTAPLS 332