Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., LacI family transcriptional regulator from Sinorhizobium meliloti 1021

 Score =  171 bits (433), Expect = 2e-47
 Identities = 120/335 (35%), Positives = 179/335 (53%), Gaps = 9/335 (2%)

Query: 4   MKDVAQLAGVSTATVSRAL--MNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRN---E 58
           M DVA++AGVS ++VS  L  M+  ++S+ TR RV EA  + GY   +  ++L R    E
Sbjct: 1   MTDVARIAGVSQSSVSLVLNEMSGARISAETRARVREAARKIGYRLPNTRQDLARAPAIE 60

Query: 59  SKTIVAIVPDIC-DPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQAD 117
             TI  IV +I   P+    + GI D A E G LV    +      E++ +  V    A 
Sbjct: 61  KDTIAFIVDEISTSPHPVVSLDGIRDYAFEQGLLVSAHATRSNPDLESAVLRAVLRDPAI 120

Query: 118 GMLLLGTDLPFDVSKP-EQKNLPPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGH 176
             ++  T     VS P E   +P +++ C   P   +  V    +   F A  +LT LGH
Sbjct: 121 AGVIYATIFTRKVSVPRELAGVPTILLNCYAEPRQHMAIVP-GEVAGGFAATAHLTSLGH 179

Query: 177 KRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPE 236
           +RI  I+G         R +GY+QAL  A I  + +    GD+    G +A  +LLA+  
Sbjct: 180 RRIGFINGEPWMDAAIDRLKGYKQALATADIAYDESLVRNGDWLPLRGYEAALELLAIDN 239

Query: 237 QPTAIFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIG 296
            PTAIFC ND MAIGA++ A   GLRVP DLSV+G+DD + A+Y  PPL+T+  P YE+G
Sbjct: 240 PPTAIFCGNDLMAIGALEAASERGLRVPHDLSVMGYDDQELARYTHPPLSTLVLPNYEMG 299

Query: 297 RQAMLMMLEL-LRGHDVRAGSRLLETKLVVRESAA 330
           ++A  M++++ + G + R  +  ++  LV R + A
Sbjct: 300 QKAAEMLIDMAIHGKNPRPMTIKVDGPLVERGTTA 334