Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., periplasmic binding protein/LacI transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  184 bits (468), Expect = 2e-51
 Identities = 116/329 (35%), Positives = 177/329 (53%), Gaps = 2/329 (0%)

Query: 1   MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESK 60
           MAT+ DV+ LAGVS ATVSR + N  KVS  TR++V +A+ +  Y PN++A++L  N S 
Sbjct: 1   MATIYDVSFLAGVSLATVSRVVNNTGKVSDKTRQKVHDAMAKLDYRPNTIAQSLASNRSN 60

Query: 61  TIVAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGML 120
           +I  +V  +  P++  ++R +E A       V++        +E   V  + ++  D ++
Sbjct: 61  SIGVLVSQLDGPFYGPMMREVESALRAANKHVIIAAGHSDAAQEKDGVEFLLSRGCDALI 120

Query: 121 LLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKRIA 180
           +    L         +   P+V+       ++   VH++NL     A  ++ + GHK+IA
Sbjct: 121 VDAEILSNGYLVELCQGKTPVVLINRHVDGIDERCVHLNNLQGGLLASRHVLEKGHKQIA 180

Query: 181 QISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA 240
            ISGP      + R +G++QAL   GI  +      GDF  E G +A+ QLL+     TA
Sbjct: 181 YISGPLFKLDARERLEGHRQALAEQGIAFDENLFYEGDFREEGGYEAMAQLLSRGRDFTA 240

Query: 241 IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAM 300
           + C ND MA GAI +    GLRVP+D+S VGFD+I F +Y  P LTT+  P  ++GR A 
Sbjct: 241 VVCANDQMASGAIAQCLERGLRVPEDISFVGFDNIPFPRYISPKLTTVCNPIQDMGRMAA 300

Query: 301 LMML-ELLRGHDVRAGSRLLETKLVVRES 328
             +L E+    DV    R  E +LVVR+S
Sbjct: 301 HWVLREVYDQTDVTFCHR-FEPELVVRDS 328