Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., Transcriptional Regulator, LacI family (NCBI) from Rhodospirillum rubrum S1H

 Score =  168 bits (426), Expect = 2e-46
 Identities = 111/330 (33%), Positives = 178/330 (53%), Gaps = 8/330 (2%)

Query: 3   TMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTI 62
           ++KDVA+ AGVS +TVSRAL     +S   R++VE AV E GY PN  AR LR  ES T+
Sbjct: 12  SIKDVARHAGVSPSTVSRAL-GRGPISEPLRQQVEAAVRETGYRPNLSARRLRSRESGTV 70

Query: 63  VAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLL 122
             I+ DI +P+F+ + R +EDAA + G  V+L ++G+   RE  ++ L+  ++  G++  
Sbjct: 71  GLILADIGNPFFTALTRAVEDAAYQAGLRVILCNTGEDAEREAMYLRLMQEERVSGVIFA 130

Query: 123 GTDLPFDVSKPEQKNLP-PMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQ 181
            T    D   P Q  L  P+V+     P+    +V +DN  +    V++    G++RI  
Sbjct: 131 PTLAYLD--HPPQSPLDFPVVLVDRAGPQGLYDSVVLDNEAACATLVDHFHARGYRRING 188

Query: 182 ISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTAI 241
           + G   A   + R +GY   +R  G  + P  C       EA   AV + L+ PE P AI
Sbjct: 189 LFGKTSATGVE-RRRGYDDTMRAYG--LEPKACAIAPHA-EAAEVAVSRWLSEPEPPEAI 244

Query: 242 FCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAML 301
              N  + IGA++  +R  LR+P D+++ GFD+  + +  +P +T I QP   IGR AM 
Sbjct: 245 VASNSLLLIGALRAVRRAWLRLPDDIALAGFDNELWTELVEPGMTVIEQPIEAIGRAAMS 304

Query: 302 MMLELLRGHDVRAGSRLLETKLVVRESAAP 331
           ++ + +    +     +L+ + ++R S+AP
Sbjct: 305 LLRDRMADPTLPPRQIVLKGRAIIRGSSAP 334