Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., LacI family DNA-binding transcriptional regulator from Pseudomonas fluorescens SBW25-INTG

 Score =  209 bits (531), Expect = 1e-58
 Identities = 120/334 (35%), Positives = 184/334 (55%), Gaps = 6/334 (1%)

Query: 1   MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESK 60
           MAT+KDVA LAG+S  TVS  +     VS   R +VE A+ +  Y P+++AR+L+   + 
Sbjct: 1   MATIKDVAALAGISYTTVSHVVNKTRPVSEPVRIKVEAAIKQLDYVPSAVARSLKAKTTA 60

Query: 61  TIVAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGML 120
           TI  +VP+  +PYF+E+ RGIED    +GY V+L +S     ++ S++ ++  K+ DG++
Sbjct: 61  TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNAEKQRSYLRVLLEKRIDGLI 120

Query: 121 LL---GTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHK 177
           +    G D          +   PMV+       +++  V ID+   A+ A  +L +LGH+
Sbjct: 121 VTSVGGDDSGLAAGLSAVRT--PMVIVDRALDGIDVDLVRIDHEEGAYLATRHLLELGHR 178

Query: 178 RIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQ 237
            IA I GP H  + Q R  GY +AL+ AG+ +        DFT   G  A  QLLA    
Sbjct: 179 DIACIGGPAHTRVAQMRLAGYHRALQEAGVAVAANRTQESDFTSTGGYTAAVQLLA-NNP 237

Query: 238 PTAIFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGR 297
           P+AIF  ND +  G ++ A    +RVP +LSV+GFDDIQ  +Y  P LTT+ Q   ++G 
Sbjct: 238 PSAIFASNDMIGFGVLRAAAERNIRVPGELSVIGFDDIQMGRYVYPALTTVGQSIVQLGE 297

Query: 298 QAMLMMLELLRGHDVRAGSRLLETKLVVRESAAP 331
            A  ++L  +    +    R++   +V+RES AP
Sbjct: 298 TAAELLLRRIATPQLPIDQRIVTPSIVLRESTAP 331