Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., ribose operon transcriptional repressor RbsR from Pantoea sp. MT58

 Score =  211 bits (537), Expect = 2e-59
 Identities = 116/328 (35%), Positives = 195/328 (59%), Gaps = 5/328 (1%)

Query: 4   MKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIV 63
           MKDVA+LAGVST+TVS  + N   VS   R++VE+A+    Y+P++LAR+L+ N++ TI 
Sbjct: 1   MKDVARLAGVSTSTVSHVINNNRFVSDGVREKVEQAIRHLNYAPSALARSLKINQTHTIG 60

Query: 64  AIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLG 123
            ++    +P+++E++RG+E++  + GY ++L ++   + R N  +  +  K+ DG+L++ 
Sbjct: 61  MLLTTSSNPFYAEVVRGVEESCYQRGYSLILCNTAGDEERMNRSLETLMQKRVDGLLMMC 120

Query: 124 TD--LPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDNLTSAFE-AVNYLTQLGHKRIA 180
           T+  LP         ++P ++M  ++AP      +  DN     E A  +L   G+ RIA
Sbjct: 121 TESHLPSADILNRYPSIPTVMM--DWAPFEGRGDIIQDNALLGGELATQHLIDCGYTRIA 178

Query: 181 QISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA 240
            I+GPQ     + R +GY+ A+ ++G+ + P Y   GDF F+ G   + +LLAL   P A
Sbjct: 179 CIAGPQDKTPARMRLEGYRNAMTKSGLEILPGYVVNGDFEFQGGYNGMVELLALETPPEA 238

Query: 241 IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAM 300
           +F  ND MA+G      + G+R+PQ ++V+G+DDI+ A+Y  PPL+TI QP+  +G  A+
Sbjct: 239 VFTSNDAMAVGVYHALYQAGMRIPQQMAVMGYDDIELARYLTPPLSTIHQPKDALGELAI 298

Query: 301 LMMLELLRGHDVRAGSRLLETKLVVRES 328
             ++  L   D    + +L  +LVVR S
Sbjct: 299 DTLIHRLSDPDASQQTLVLTPELVVRGS 326