Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., transcriptional regulator RbsR from Klebsiella michiganensis M5al

 Score =  211 bits (536), Expect = 3e-59
 Identities = 120/329 (36%), Positives = 196/329 (59%), Gaps = 5/329 (1%)

Query: 4   MKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIV 63
           MKDVA++AGVST+TVS  +     VS +   +V+ A+    Y+P++LAR+L+ N+++TI 
Sbjct: 1   MKDVARIAGVSTSTVSHVINKDRFVSEAITAKVDAAIKSLNYAPSALARSLKLNQTRTIG 60

Query: 64  AIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLG 123
            ++    +P++SE++RG+E +  E GY ++L ++   ++R N  +  +  K+ DG+LLL 
Sbjct: 61  MLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLC 120

Query: 124 TDL--PFDVSKPEQKNLPPMVMACEFAP-ELELPTVHIDNLTSAFEAVNYLTQLGHKRIA 180
           T+   P         ++P ++M  ++AP + +   +  ++L     A  YL   G+ RIA
Sbjct: 121 TETHQPSPEIMQRYPSVPTVMM--DWAPFDGDSDLIQDNSLLGGDMATKYLIDQGYTRIA 178

Query: 181 QISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA 240
            I+GP      + R +GYQ A+ RAG+T+   Y    DF F  G  A+++LL L   P A
Sbjct: 179 CIAGPLDKTPARLRLEGYQAAMARAGLTVPEGYVISSDFEFGGGFSAMQKLLTLSALPQA 238

Query: 241 IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAM 300
           +F  ND MA+GA Q   + GLR+PQD+++VG+DDI+ A+Y  PPLTTI QP+ E+G  A+
Sbjct: 239 VFIGNDAMAVGAYQALYQGGLRIPQDMALVGYDDIELARYMTPPLTTIHQPKDELGELAI 298

Query: 301 LMMLELLRGHDVRAGSRLLETKLVVRESA 329
            +++  +     +     L  +LVVR SA
Sbjct: 299 DVLIHRMADPGQKQQRVQLTPELVVRGSA 327