Pairwise Alignments

Query, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., Ribose operon repressor from Enterobacter sp. TBS_079

 Score =  177 bits (449), Expect = 3e-49
 Identities = 114/331 (34%), Positives = 183/331 (55%), Gaps = 13/331 (3%)

Query: 3   TMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTI 62
           +++ +AQLAGVS ATVSR L N + V +  R+RV +A+ E+ Y PN LAR LR   S  I
Sbjct: 2   SIQKIAQLAGVSVATVSRVLNNSDTVKAKNRERVLQAIKESNYQPNLLARQLRTARSYMI 61

Query: 63  VAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLL 122
           + +V +I +P+ +E+++GIE+ A ++GY +LL +SG    R  S ++L+  K  DG++ +
Sbjct: 62  LVMVSNIANPFCAEVVKGIEEEAEKNGYRILLCNSGSDIERSRSGLSLLSGKIVDGIITM 121

Query: 123 GTDLPFDVSK-PEQKNL---PPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKR 178
                   SK PE   L    P V   E+A    +  V I+++ ++  AV+ L   G  R
Sbjct: 122 DA-----FSKLPELAALIGAAPWVQCAEYADAGAVSCVGINDVDASQHAVSQLADGGRGR 176

Query: 179 IAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQP 238
           IA I+        + R +GY+  +    +          D +F AG  A++ LL     P
Sbjct: 177 IAMINHDLSYKYARLRERGYKSVIHLKDLAYQAVEYA-SDLSFSAGIAAMQNLLK-ENPP 234

Query: 239 TAIFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQ 298
            A+F  +DT+A GA+   ++ GLRVP+D++VVGFD  + A+     LTTI QP  +IGR+
Sbjct: 235 DAVFAVSDTLAAGALHAIQQAGLRVPEDIAVVGFDGTELAEMIS--LTTIEQPSRDIGRK 292

Query: 299 AMLMMLELLRGHDVRAGSRLLETKLVVRESA 329
           A+ ++L  +   D      +++ + + R SA
Sbjct: 293 AVDLLLNKIDNPDAPTERVMMDWRFISRASA 323