Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., Na+ driven multidrug efflux pump from Pseudomonas fluorescens FW300-N2E2

 Score =  135 bits (341), Expect = 2e-36
 Identities = 108/400 (27%), Positives = 189/400 (47%), Gaps = 11/400 (2%)

Query: 55  LLGTQALAAISYTFPVTFAVNCITMGIGVGLSTCIGRLLGQGDGRQAARVSSHGLLLALL 114
           +LGTQALAA+S  FP+ F    + +G+G G    IG+  G G+      ++   LLL  +
Sbjct: 22  MLGTQALAAVSGMFPIVFFFIALVIGLGAGAGVLIGQAYGAGETGTVKAIAGSTLLLGAI 81

Query: 115 LVAAASTLGLLTIEPLFLLLGASHELIPLIKEYMVVWYLTIPLLVLPMAGNSAIRATGDT 174
           +  AA+ LG +        LG   +++     Y  V    +P+L++ +     +R   DT
Sbjct: 82  IGLAAAVLGSVFARQALQGLGTPADVLEDAVSYARVMLWILPMLLIFVLFTQLLRGVSDT 141

Query: 175 KTPAKIMMLAGLINGALDPLLIFGYGPFPELGIQGAAIASAFSWLGALIGSLYLLIKREK 234
            +P   ++ +  +   L P LI G+   P++GIQ AA+A       A+    + L +RE 
Sbjct: 142 VSPMLALLTSTSVGLLLTPALIRGWLGLPQMGIQSAALAGLVGTASAMAMLAWRLNRREH 201

Query: 235 LLAIPS--LPHLRDDWQ---QILKIGTPAALSTAMNPISGALLMIMLSSHGTAAVAAYGA 289
            LA        +R D +   ++L+IG P  L   +  +S  +++ +++SHG+ A AAYGA
Sbjct: 202 ALAPDRALFAAMRLDMEILGKVLRIGLPTGLQMVVISLSELVILTLVNSHGSQATAAYGA 261

Query: 290 TQRIESILILVLMSLTSALTPFMAQNLGAQNPARSFAGLFLSLRFSLLFQLMVFIMMVPL 349
             +I + +    +S+    +   AQ +GA    R    L   L  +L     + ++   L
Sbjct: 262 VTQIVNYVQFPALSIAITASILGAQAIGAGRLERLGPILRTGLLINLWLTGGLVVLGYLL 321

Query: 350 SIPLAALFSQEQAVR---DLLWHYLLVVPVSYGFQGVVMMLVSALNALHQPLKAFQWSFM 406
           S  L  LF  + A R   + L H +L   + +GFQ +V  ++ A   +  P+     S  
Sbjct: 322 SHWLLGLFITDPAARVQAEHLLHIMLWSLLVFGFQAIVGGIMRASGTVLVPVAI---SIF 378

Query: 407 RLFVFTLPAAWIGGRLYNIEGLFIGIAVGNILGGLLGYLY 446
            + V  +PAA++    + ++G+++   V  +   LL  LY
Sbjct: 379 CIVVVQVPAAYLLDAHFGLQGVWVAFPVAYLSMLLLQTLY 418



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 21/199 (10%)

Query: 33  VPMIFGLVAILMFNLVDTFFISLLGTQALAAISYTFPVTFAVNCITMGIGVGLSTCIGRL 92
           +P    +V I +  LV    ++  G+QA AA      +   V    + I +  S    + 
Sbjct: 228 LPTGLQMVVISLSELVILTLVNSHGSQATAAYGAVTQIVNYVQFPALSIAITASILGAQA 287

Query: 93  LGQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFLL--------LGASHELIPLI 144
           +G G   +   +   GLL+ L L      LG L    L  L        + A H L    
Sbjct: 288 IGAGRLERLGPILRTGLLINLWLTGGLVVLGYLLSHWLLGLFITDPAARVQAEHLL---- 343

Query: 145 KEYMVVWYLTIPLLVLPMAGNSAIRATGDTKTPAKIMMLAGLINGALDPLLIFGYGPFPE 204
             ++++W L +      + G   +RA+G    P  I +   ++       L+  +     
Sbjct: 344 --HIMLWSLLVFGFQAIVGG--IMRASGTVLVPVAISIFCIVVVQVPAAYLLDAH----- 394

Query: 205 LGIQGAAIASAFSWLGALI 223
            G+QG  +A   ++L  L+
Sbjct: 395 FGLQGVWVAFPVAYLSMLL 413