Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Pseudomonas fluorescens FW300-N2E2

 Score = 75.9 bits (185), Expect = 3e-18
 Identities = 97/420 (23%), Positives = 177/420 (42%), Gaps = 32/420 (7%)

Query: 28  LRQMTVPMIFGLVAILMFNLVDTFFISLLGTQALAAISYTFPVTFAVNCITMGIGVGLST 87
           L  + +P++   +A      VD      +G + LAA++    +   V  +  G  +  + 
Sbjct: 1   LLALALPIMVAQLATTAMGFVDAVMAGRVGPRDLAAVALGNSIWVPVFLLMTGTLLATTP 60

Query: 88  CIGRLLGQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFLLLGASHELIPLIKEY 147
            + +  G G   +   +    L LA L+V   ++L L + EP+  ++    ELI    EY
Sbjct: 61  KVAQRFGAGTFAEIGPLVRQALWLA-LVVGLIASLALFSAEPILHIMNVDPELIGPCMEY 119

Query: 148 MVVWYLTIPLLVLPMAGNSAIRATGDTKTPAKIMMLAGL-INGALDPLLIFGYGPFPELG 206
           +      +P + L           G T+ PA ++ L GL +N  L+ + I+G+   P +G
Sbjct: 120 LRGIGTGLPAVALYHVLRCFSDGLGRTR-PAMVLGLCGLALNIPLNYIFIYGHLGVPAMG 178

Query: 207 IQGAAIASAF-SWLGALIGSLYLLIKREKLLAIPSLPHLRDDWQQ------ILKIGTPAA 259
             G   A+A   W+ AL  + +    R       S    R DW Q      +L IG P  
Sbjct: 179 GVGCGWATAIVMWVMALGMAGW---ARWAPAYQSSRLFSRFDWPQWAVIKRLLGIGLPIG 235

Query: 260 LSTAMNPISGALLMIMLSSHGTAAVAAYGATQRIESILILVLMSLTSALTPFMAQNLGAQ 319
           ++        A++ +++ S G   VA +       S++ ++  SL  A+T  + Q LG  
Sbjct: 236 IAVFAESSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGMAVTVRVGQALGRA 295

Query: 320 NPARSFAGLFLSLRFSLLFQLMVFIMMVPLSIPLAALFSQEQAVRDLLWHYLLVVPVSYG 379
            P  +     + +  +L +  +   +M  L  P+AA+++ +  V ++    L+V    + 
Sbjct: 296 QPREARFAAGVGMGTALAYACLSASLMFALRGPIAAIYTADPVVIEVA-SMLIVYAALFQ 354

Query: 380 FQGVVMMLVSALNALHQPLKAFQWSFMRLFVFTLPAAWIGGRLYNIEGLFIGIAVGNILG 439
           F   +   V+A  A    L+ +Q + + + + TL A W            IG+ VG  LG
Sbjct: 355 FSDAIQ--VTAAGA----LRGYQDTRVTM-ILTLFAYW-----------GIGLPVGYALG 396



 Score = 34.7 bits (78), Expect = 6e-06
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 21/209 (10%)

Query: 19  LLSAPIPLVLRQMTVPMIFGLVAILMFNLVDTFFISLLGTQALAAISYTFPVTFAVNCIT 78
           LL   +P+ +       IF ++A+L         I  LG   +A        +  V  I 
Sbjct: 227 LLGIGLPIGIAVFAESSIFAVIALL---------IGSLGATVVAGHQIALNFSSLVFMIP 277

Query: 79  MGIGVGLSTCIGRLLGQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFLLLGASH 138
             +G+ ++  +G+ LG+   R+A   +  G+  AL     +++L      P+  +  A  
Sbjct: 278 YSLGMAVTVRVGQALGRAQPREARFAAGVGMGTALAYACLSASLMFALRGPIAAIYTADP 337

Query: 139 ELIPLIKEYMVVWYLTIPLLVLPMAGNSAIRATGDTKTPAKIMMLAGLINGALDPLLIFG 198
            +I +    +V   L      + +    A+R   DT+    + + A    G     L  G
Sbjct: 338 VVIEVASMLIVYAALFQFSDAIQVTAAGALRGYQDTRVTMILTLFAYWGIG-----LPVG 392

Query: 199 YGPFPELGIQ---GAAIASAFSWLGALIG 224
           Y     LG+    GAA   +  W G ++G
Sbjct: 393 YA----LGLTDWLGAASGPSGLWQGLIVG 417