Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., multi anti extrusion protein MatE (RefSeq) from Shewanella amazonensis SB2B

 Score = 91.3 bits (225), Expect = 6e-23
 Identities = 102/450 (22%), Positives = 189/450 (42%), Gaps = 58/450 (12%)

Query: 13  MHDKHGLLSAPIPLVLRQMTVPMIFGLVAILMFNLVDTFFIS-LLGTQALAAISYTFPVT 71
           M+    +L AP+  +  + T+P I  ++   ++  +D  F+   LG   LA I   +PV 
Sbjct: 1   MNHTQAMLEAPVSRLFWRYTLPTIASMLVTGIYVTIDGMFVGHFLGETGLAGIMLAYPVG 60

Query: 72  FAVNCITMGIGVGLSTCIGRLLGQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLF 131
             +  +   IG+G    +   LG+G   +A  +  +   L LL     + +G ++   + 
Sbjct: 61  ALLYAVGALIGMGAGALVSIKLGEGKTAKARELLGNAFSLVLLSALFFTLVGSVSARHIL 120

Query: 132 LLLGASHELIPLIKEYMVVWYLTIPLL-VLPMAGNSAIRATGDTKTPAKIMMLAGLINGA 190
           + LGA  E++    +Y+  WY  + +  ++ MA ++ +R  G       +++  G+IN  
Sbjct: 121 IWLGAEGEVLESAHDYLF-WYFALCIFPLISMAFSTLLRNDGKPAFVTWVLIAGGVINTL 179

Query: 191 LDPLLIFGYGPFPELGIQGAAIASAFSW--LGALIGSLYLLIKREKLLAIPSLPHLRDDW 248
           LD L I  +    + G+ GA++A+  S    G L    +   K    +    +    D+ 
Sbjct: 180 LDYLFIVVW----DFGLAGASVATMLSQAVTGLLCLQHFFSGKTALRIDFEQMRLKLDNC 235

Query: 249 QQILKIGTPAALSTAMNPISGALLMIMLSSHGTAA--------VAAYGATQRIESILILV 300
             I ++G P+ L   MN      L I+L+ H TA         VAAYG     E+   L+
Sbjct: 236 LNISRVGLPSLL---MN----LYLSIVLTLHNTALLWVGTPLHVAAYGVVSYTEAFFYLI 288

Query: 301 LMSLTSALTPFMAQNLGA-------QNPARSFAGLFLSLRFSLLF-------QLMVFIMM 346
              +     P ++ N GA       Q    + A   L+    LLF        L +F   
Sbjct: 289 FEGIALGSQPVLSFNAGAGRMDRVRQTRNLAMAVTLLTAGLGLLFIYGRPEWALYIFAGD 348

Query: 347 VPLSIPLAALFSQEQAVRDLLWHYLLVVPVSYGFQGVVMMLVSALNALHQPLKAFQWSFM 406
            P+  P+A      + +R   W           F+G++++  S   A+++P +A   +  
Sbjct: 349 NPVLSPVAI-----EGMRLYFW--------GLPFEGLILVGASFFQAINKPREASILTGT 395

Query: 407 RLFVFT---LPAAWIGGRLYNIEGLFIGIA 433
           +L +        AW    L+ + G+++ +A
Sbjct: 396 KLLLIAAVIYSFAW----LFGVPGVWVSLA 421