Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score =  101 bits (252), Expect = 4e-26
 Identities = 110/436 (25%), Positives = 202/436 (46%), Gaps = 23/436 (5%)

Query: 15  DKHG-LLSAPIPLVLRQMTVPMIFGLVAILMFNLVDTFFIS-LLGTQALAAISYTFPVTF 72
           D+H  L +APIP ++ +  +P I  +V   ++  +D  F+   LG   LA +   +PV  
Sbjct: 11  DEHSDLATAPIPKLVWRYAIPTILSMVVTGVYVAIDGMFVGHYLGEVGLAGMMLAYPVGA 70

Query: 73  AVNCITMGIGVGLSTCIGRLLGQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFL 132
            +  +   IG+G ++ +   LG  D  +A  +  +   L LL     + LG    + + +
Sbjct: 71  ILYAVGALIGMGAASLVSINLGLKDVARARHLLGNAFTLCLLAGTGLALLGTRWSQTILI 130

Query: 133 LLGASHELIPLIKEYMVVWYLTIPLL-VLPMAGNSAIRATGDTKTPAKIMMLAGLINGAL 191
            LGA  E++   ++Y+  WY  + +  VL +A  + +R  G       +++L+G +N  L
Sbjct: 131 WLGAEGEVLTSAEQYLF-WYFALGVFPVLAIAFTALLRNDGRPGFVTLVLILSGCLNVLL 189

Query: 192 DPLLIFGYGPFPELGIQGAAIAS----AFSWLGALIGSLYLLIKREKL-LAIPSLPHLRD 246
           D LLI     FP  G+ GAAIA+    AF+ L  L    +   KR +L +    +    D
Sbjct: 190 DWLLIV---VFP-YGLAGAAIATMICQAFTALACL---QHFFTKRTRLGINWQQMRLNLD 242

Query: 247 DWQQILKIGTPAALSTAMNPISGAL-LMIMLSSHGTAAVAAYGATQRIESILILVLMSLT 305
               IL++G P+ L      I   L  M  L   G   VAAYG     E++  L+   + 
Sbjct: 243 HCSNILRVGVPSFLMNLYLSIVLTLHNMAFLWVGGPIHVAAYGVVSYAEALFYLIFEGIA 302

Query: 306 SALTPFMAQNLGAQNPARSFAGLFLSLRFSLLFQL--MVFIMMVPLSIPLAALFSQEQA- 362
               P  + N GA+   R F  L L +  +L+  L  +VFI   P    L  +F+ + + 
Sbjct: 303 FGTQPLFSFNTGAKRFDRVFETLRLVIIMTLVTALAGVVFIYWAPEY--LVYIFAGDNSE 360

Query: 363 VRDLLWHYLLVVPVSYGFQGVVMMLVSALNALHQPLKAFQWSFMRLFVFTLPAAWIGGRL 422
           +  +    + +      F+G++++  +   A+++P +A   +  +L +  +   ++   L
Sbjct: 361 LAPVAIEGMRLYFWGLPFEGLILVGAAFFQAINRPKEASILTGSKLVLIAM-VLYLFAWL 419

Query: 423 YNIEGLFIGIAVGNIL 438
           + + G++I +A  ++L
Sbjct: 420 FGVTGVWISLASCSLL 435