Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score =  403 bits (1035), Expect = e-117
 Identities = 214/447 (47%), Positives = 304/447 (68%), Gaps = 2/447 (0%)

Query: 13  MHDKHGLLSAPIPLVLRQMTVPMIFGLVAILMFNLVDTFFISLLGTQALAAISYTFPVTF 72
           M D+HGLLS PI  VL  M++P + G++ IL F+LVDTFFIS LGT+ALAAIS+TFPVT 
Sbjct: 1   MRDRHGLLSQPIGRVLLNMSLPNLIGILTILGFSLVDTFFISQLGTEALAAISFTFPVTL 60

Query: 73  AVNCITMGIGVGLSTCIGRLLGQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFL 132
            V+ I +GIG G+ST +GRL+G G+  +A       LL+   L+AA S LG L I PLF 
Sbjct: 61  IVSSIAIGIGAGVSTNLGRLIGSGNSPKAKVFLHDALLITFWLIAALSLLGSLFIGPLFT 120

Query: 133 LLGASHELIPLIKEYMVVWYLTIPLLVLPMAGNSAIRATGDTKTPAKIMMLAGLINGALD 192
           LLGA+ + +PLI++YM +WYL  PLLVL M GN  +RATGDTK+PAKIM LA +IN  LD
Sbjct: 121 LLGANDDSLPLIRDYMFLWYLGAPLLVLLMVGNQGLRATGDTKSPAKIMALAAVINLVLD 180

Query: 193 PLLIFGYGPFPELGIQGAAIASAFSWLGALIGSLYLLIKREKLL--AIPSLPHLRDDWQQ 250
           PLLIFG GPFP L IQGAAIA+  SW+ AL  S YLLI +  L+  A  +L  +  +W+Q
Sbjct: 181 PLLIFGLGPFPRLEIQGAAIATLISWVVALSLSGYLLIIKRNLVDFAEFNLERIHCNWRQ 240

Query: 251 ILKIGTPAALSTAMNPISGALLMIMLSSHGTAAVAAYGATQRIESILILVLMSLTSALTP 310
           +  I  PAAL   +NP++ A++M ML+    +AVAA+GA  R+ES+L++ +M+L+S+L P
Sbjct: 241 LAHIAQPAALMNLLNPVANAIIMAMLARIDHSAVAAFGAGTRLESVLLIAVMALSSSLVP 300

Query: 311 FMAQNLGAQNPARSFAGLFLSLRFSLLFQLMVFIMMVPLSIPLAALFSQEQAVRDLLWHY 370
           F+AQNLGA    R+   L LSLRF L+FQ ++++ +  ++ P+A LFS++  V + L  Y
Sbjct: 301 FIAQNLGAGQTERARDALMLSLRFVLVFQTLIYLPLALMATPIAQLFSKDPQVIEWLSFY 360

Query: 371 LLVVPVSYGFQGVVMMLVSALNALHQPLKAFQWSFMRLFVFTLPAAWIGGRLYNIEGLFI 430
           ++ +P +YG  G+V++  ++LNA H+P+ +   +  RLF+  LP A +G  L  ++GL +
Sbjct: 361 IIALPAAYGPLGMVILTATSLNAYHRPMSSLVLNVCRLFLLLLPLAALGSYLGGVKGLLL 420

Query: 431 GIAVGNILGGLLGYLYALRLRRQTLTP 457
            + + N + G+  Y+ A R+     TP
Sbjct: 421 ALPITNAVMGIACYILASRITEPDTTP 447