Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  164 bits (415), Expect = 6e-45
 Identities = 107/414 (25%), Positives = 205/414 (49%), Gaps = 5/414 (1%)

Query: 38  GLVAILMFNLVDTFFISLLGTQALAA-ISYTFPVTFAVNCITMGIGVGLSTCIGRLLGQG 96
           G+ A+ + +L+D FF+SLLG   LAA + Y   ++F    I +G+ + L   + R +G  
Sbjct: 25  GISALFVVDLLDIFFLSLLGEHELAAAVGYAGSISFFTTLIGIGLSIALGALVSRSIGAK 84

Query: 97  DGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFLLLGASHELIPLIKEYMVVWYLTIP 156
           D   A R+  +  ++  L+    S +    I  L  L+GAS     L + Y+ +   ++P
Sbjct: 85  DVELAKRLLLNSAVVTTLISVFVSIVVTTFIPELVTLVGASGHTAELAESYLYILVPSLP 144

Query: 157 LLVLPMAGNSAIRATGDTKTPAKIMMLAGLINGALDPLLIFGYGPFPELGIQGAAIASAF 216
            + L MA   A+R+ GD K      +  G +N  LDP+ IF +     +GI+GAA+AS  
Sbjct: 145 FICLAMALGGALRSVGDAKLSMMSTLAGGGVNAVLDPIFIFLFA----MGIEGAALASVL 200

Query: 217 SWLGALIGSLYLLIKREKLLAIPSLPHLRDDWQQILKIGTPAALSTAMNPISGALLMIML 276
           + +   + +   ++ + +LL   +    + D + I  I  PA L+    PI  A +   +
Sbjct: 201 ARITVFVIAGRGVMVKHQLLGKFNRSDFKADLKPIFAIAGPAILTNIATPIGNAFVTRAI 260

Query: 277 SSHGTAAVAAYGATQRIESILILVLMSLTSALTPFMAQNLGAQNPARSFAGLFLSLRFSL 336
           +  G A VA +    R+  +   ++ +L+ A+ P + QN GA    R    L  +++F  
Sbjct: 261 ADFGDAYVAGWAVLGRLVPVTFGMIFALSGAIGPIVGQNFGAGRFDRVRESLTKAIQFCT 320

Query: 337 LFQLMVFIMMVPLSIPLAALFSQEQAVRDLLWHYLLVVPVSYGFQGVVMMLVSALNALHQ 396
           L+ +++ +++  L   + +LF  +     L+  +   + V + F G++ +  ++ N L +
Sbjct: 321 LYVVVMSLLLFLLKSQIVSLFDMKGDSAALIEFFCSYIAVFFIFSGILFVANASFNNLGK 380

Query: 397 PLKAFQWSFMRLFVFTLPAAWIGGRLYNIEGLFIGIAVGNILGGLLGYLYALRL 450
              +  ++  +  + T+P  ++G +L  + G+ IG  +G+IL G++G   A RL
Sbjct: 381 AKYSTLFNVGKATLGTVPFVYVGAQLGGVYGVLIGQVIGSILFGVVGVWVAYRL 434