Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 91.7 bits (226), Expect = 5e-23
 Identities = 100/423 (23%), Positives = 181/423 (42%), Gaps = 54/423 (12%)

Query: 19  LLSAPIPLVLRQMTVPMIFGLVAILMFNLVDTFFIS-LLGTQALAAISYTFPVTFAVNCI 77
           LL  PI  +  + T+P I  ++   ++  +D  F+   LG   LA +   +PV   +  I
Sbjct: 13  LLQEPIAKLFWRYTIPTIASMLVTGVYVTIDGIFVGHYLGETGLAGMMLAYPVGAILYAI 72

Query: 78  TMGIGVGLSTCIGRLLGQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFLLLGAS 137
              IG+G +  +   LGQG+  +A ++  +   L LL  A  + +G +    + + LGA 
Sbjct: 73  GAMIGMGSAALVSINLGQGNVAKARKLLGNAFSLCLLAGAFFALVGGVFSRDILIALGAE 132

Query: 138 HELIPLIKEYMVVWYLTIPLLVLPMAGNSAIRATGDTKTPAKIMMLAGLINGALDPLLIF 197
            E++    EY+  ++      ++ MA  + +R  G       +++L G++N  LD L I 
Sbjct: 133 GEILENANEYLFWYFALCHFPIISMAFTTLLRNDGRPSMVTFVLILGGVLNTFLDWLFIV 192

Query: 198 GYGPFPELGIQGAAIASAFSW--LGALIGSLYLLIKREKLLAIPSLPHLRDDWQQILKIG 255
            + PF   G+ GAAIA+  S    G L    +   + +  + +  +    D+   I ++G
Sbjct: 193 VF-PF---GLAGAAIATMLSQAVTGLLCLQHFFGARTQLKINLEQMKLKLDNCINIARVG 248

Query: 256 TPAALSTAMNPISGALLMIMLSSHGTA--------AVAAYGATQRIESILILVLMSLTSA 307
            P+ L   MN      L I+L+ H TA         VAAYG     E+   L+   +   
Sbjct: 249 LPSFL---MN----LYLSIVLTLHNTAFLWVGGPLHVAAYGVVSYTEAFFYLIFEGIALG 301

Query: 308 LTPFMAQNLGAQNPARSFAGLFLSLRFSLLFQLMVFIMMVPLSIPLAALFSQEQ------ 361
             P  + N GA    R      ++   +LL   +  +++      L  LF+ +       
Sbjct: 302 TQPIYSFNAGAGRFDRVKQARNIAFSMTLLTAALGLVLIYSRPEWLVYLFAGDNPSLTPV 361

Query: 362 AVRDLLWHY-------LLVVPVSYGFQ------------GVVMMLVSALNALHQPLKAFQ 402
           A+  + W++       L++V  S+ FQ            G  ++L++A+      +  F 
Sbjct: 362 AIEGMRWYFWGLPMEGLILVGASF-FQAINCSKQASILTGAKLILIAAI------IYCFA 414

Query: 403 WSF 405
           W+F
Sbjct: 415 WAF 417