Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  404 bits (1037), Expect = e-117
 Identities = 213/440 (48%), Positives = 303/440 (68%), Gaps = 2/440 (0%)

Query: 13  MHDKHGLLSAPIPLVLRQMTVPMIFGLVAILMFNLVDTFFISLLGTQALAAISYTFPVTF 72
           M D+HGLLSAPI  VL  M++P + G++ IL F+L DTFFIS LGT+ALAAIS+TFPVT 
Sbjct: 1   MKDRHGLLSAPIGRVLLNMSLPNLIGIMTILGFSLADTFFISQLGTEALAAISFTFPVTL 60

Query: 73  AVNCITMGIGVGLSTCIGRLLGQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFL 132
            ++ I +G+G G+ST +GRL+G G+  QA       LLL  +L+A+ S LG + IEPLF 
Sbjct: 61  IISSIAIGVGAGVSTNLGRLIGSGNAPQAKVFLHDALLLTFILIASLSALGSIFIEPLFS 120

Query: 133 LLGASHELIPLIKEYMVVWYLTIPLLVLPMAGNSAIRATGDTKTPAKIMMLAGLINGALD 192
           LLGA+   +PLI +YM+ WY+  PLLVL M GN  +R+TGDT++PA IM LA +IN  LD
Sbjct: 121 LLGANETSLPLIHDYMMYWYVGAPLLVLLMVGNQGLRSTGDTRSPAMIMTLAAIINLILD 180

Query: 193 PLLIFGYGPFPELGIQGAAIASAFSWLGALIGSLYLLIKREKLL--AIPSLPHLRDDWQQ 250
           PLLIFG GPFP L IQGAAIA+ FSWL AL  S YLLI + ++L  A   +  +R +W +
Sbjct: 181 PLLIFGIGPFPRLEIQGAAIATLFSWLVALSLSGYLLIIKHRMLERAAFDIDRMRANWSK 240

Query: 251 ILKIGTPAALSTAMNPISGALLMIMLSSHGTAAVAAYGATQRIESILILVLMSLTSALTP 310
           +  I  PAAL   +NP++ A++M ML+    +AVAA+GA  R+ES+L++V+M+L+S+L P
Sbjct: 241 LAHIAQPAALMNLINPLANAVIMAMLAHIDHSAVAAFGAGTRLESVLLIVVMALSSSLMP 300

Query: 311 FMAQNLGAQNPARSFAGLFLSLRFSLLFQLMVFIMMVPLSIPLAALFSQEQAVRDLLWHY 370
           F+AQNLGA  P R+   L LSL+F L+FQ +++I +   + PLA+LFS +  V + L  Y
Sbjct: 301 FIAQNLGAGQPQRAKQALLLSLKFILVFQTLLYIPLAFFAQPLASLFSTDPQVLEWLSFY 360

Query: 371 LLVVPVSYGFQGVVMMLVSALNALHQPLKAFQWSFMRLFVFTLPAAWIGGRLYNIEGLFI 430
           +LV+P +YG  G+V++  +ALNA H+P+ +   +  RL +  LP A +G  +  ++GL +
Sbjct: 361 ILVLPCAYGPLGIVIIFATALNAYHRPMSSLVINLCRLVLLMLPLAALGSYIDGVKGLLL 420

Query: 431 GIAVGNILGGLLGYLYALRL 450
            + + N+L G+  Y  A R+
Sbjct: 421 ALPITNLLMGIACYYLAQRI 440