Pairwise Alignments

Query, 544 a.a., molecular chaperone GroEL from Vibrio cholerae E7946 ATCC 55056

Subject, 549 a.a., chaperonin GroEL (RefSeq) from Shewanella loihica PV-4

 Score =  855 bits (2210), Expect = 0.0
 Identities = 450/546 (82%), Positives = 495/546 (90%), Gaps = 3/546 (0%)

Query: 1   MAAKDVRFGNDARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREI 60
           MAAK+V FGNDARVKML GVN+LA+AVKVTLGPKGRNVVLDKSFGAP ITKDGVSVA+EI
Sbjct: 1   MAAKEVLFGNDARVKMLAGVNVLANAVKVTLGPKGRNVVLDKSFGAPLITKDGVSVAKEI 60

Query: 61  ELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGI 120
           ELEDKF+NMGAQMVKEVAS+ANDAAGDGTTTATVLAQAIV EGLKAVAAGMNPMDLKRGI
Sbjct: 61  ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGI 120

Query: 121 DKAVIAAVEELKALSVPCADTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEG 180
           DKAV+AAV ELK LS  C+DTKAIAQVGTISANSD S+G IIA AMEKVG++GVITVEEG
Sbjct: 121 DKAVVAAVAELKTLSQECSDTKAIAQVGTISANSDESIGEIIATAMEKVGKEGVITVEEG 180

Query: 181 QALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNPFILLVDKKISNIRELLPVLEGV 240
           QAL++ELDVVEGMQFDRGYLSPYFIN  E+GSVEL+NP+ILLVDKKISNIRELLP+LEG+
Sbjct: 181 QALENELDVVEGMQFDRGYLSPYFINKPETGSVELENPYILLVDKKISNIRELLPILEGL 240

Query: 241 AKASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGVV 300
           AK  +PL+I+AEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGG V
Sbjct: 241 AKTGKPLMIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTV 300

Query: 301 ISEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSDY 360
           I+EEIGLELEKATLEDLG AKRV ITK+++TIIDG G+Q  I  RVAQI+ Q EE+TSDY
Sbjct: 301 IAEEIGLELEKATLEDLGTAKRVVITKDDTTIIDGTGEQEQISARVAQIKIQAEESTSDY 360

Query: 361 DKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALI 420
           D+EKLQER+AKLAGGVAVIKVGAATEVEMKEKK RVEDALHATRAAVEEGVVAGGGVALI
Sbjct: 361 DREKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALI 420

Query: 421 RAASKLSSLVGDNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVANNVRAGEGNYGYNA 480
           R ASK+  L   NE+Q  G+ +ALRAMEAPLRQI  NAG+E SVVANNV+ G GNYGYNA
Sbjct: 421 RVASKIGELDVANEDQKHGVTIALRAMEAPLRQIATNAGEEASVVANNVKNGSGNYGYNA 480

Query: 481 ATGVYGDMIEMGILDPTKVTRSALQFAASVAGLMITTEAMITELPKK-DAPAMPDM--GM 537
            + VYGDM+EMGILDPTKVTRSALQFA+S+AGLMITTEAM+ ++P++  A  M  M  GM
Sbjct: 481 GSDVYGDMLEMGILDPTKVTRSALQFASSIAGLMITTEAMVGDVPQEAGAGDMGGMGGGM 540

Query: 538 GGMGGM 543
           GGMGGM
Sbjct: 541 GGMGGM 546