Pairwise Alignments

Query, 602 a.a., fumarate reductase (quinol) flavoprotein subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 588 a.a., succinate dehydrogenase, flavoprotein subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  393 bits (1009), Expect = e-113
 Identities = 230/570 (40%), Positives = 337/570 (59%), Gaps = 43/570 (7%)

Query: 7   DIAVIGAGGAGLRTAIAAAEANPHLEVALISKVYPMRSHTVAAEGGSAAVIKD--EDSLD 64
           D  VIGAGGAG+R A+  ++       AL+SKV+P RSHTV+A+GG    + +  ED  +
Sbjct: 9   DAVVIGAGGAGMRAALQISKEGK--SCALLSKVFPTRSHTVSAQGGITVALGNAHEDHWE 66

Query: 65  NHFNDTVGGGDWLCEQDVVEYFVANATREMIQMEQWGCPWSRKENGEVNVRRFGGM---- 120
            H  DTV G D++ +QD +E+        +I++E  G P+SR +NG++  R FGG     
Sbjct: 67  QHMYDTVKGSDFIGDQDAIEFMCQTGPEAIIELEHMGLPFSRFDNGKIYQRPFGGQSKNF 126

Query: 121 ---KVERTWFAADKTGFHMLHTLFQTSMKYPQIKRLDEYFVVDLLVDE-GEIQGLIAIHM 176
              +  RT  AAD+TG  +LH L+Q ++K+ + +   E++ +DL+ ++ G I G  AI +
Sbjct: 127 GGEQAARTAAAADRTGHALLHCLYQQNVKH-KTQVFSEWYALDLVKNQDGAIVGCTAIEI 185

Query: 177 SEGELVTIKAKSVVLATGGAGRVYHCNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTG 236
             GE+V  KAK+ VLATGGAGR+Y   TN  I TGDG+ MA R GV ++DME  Q+HPTG
Sbjct: 186 ETGEIVYFKAKATVLATGGAGRIYASTTNAHINTGDGVGMAMRAGVQMQDMEMWQFHPTG 245

Query: 237 LPGTGILMTEGCRGEGGIIVNKHGYRYLQDYGMGPETPVGQPKNKYMELGPRDKVSQAFW 296
           + G G+L+TEGCRGEGG ++NK G R+++ Y          P  K  +L  RD V+++  
Sbjct: 246 IAGAGVLVTEGCRGEGGYLLNKDGERFMERYA---------PNAK--DLASRDVVARSMM 294

Query: 297 HEQQKGNTIKHPLGDVVHLDLRHLGEEYLQERLPFICELAKAYVNVDPAKEPIPIRPTVH 356
            E ++G  +  PLG    L L HLG+E L+ RLP +CEL++ + ++DPA  PIP+ PT H
Sbjct: 295 TEIREGRGLDGPLGPHCLLKLDHLGKETLEARLPGVCELSRTFAHIDPADGPIPVLPTCH 354

Query: 357 YTMGGIET--NGE--------CETRIKGLFAVGECASVGLHGANRLGSNSLAEFVVFGRV 406
           Y MGG+ T  +G+         E  + GLFAVGE A V +HGANRLG NSL + VVFGR 
Sbjct: 355 YMMGGLPTKVSGQVIRKNTDGTEQDVVGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRA 414

Query: 407 AGE---KAVERAAEFKGWNEKAIAAQVKAVEDRIAALMQQEGDENWATIRTEMGHTMEAG 463
           AG+   KA++  A+ K     A  A ++A   R+      +  E+   IR ++   M+  
Sbjct: 415 AGQHLGKALDETADPK----DATDADIQASLARLQRWESNKDGEDPVQIRKDLQLCMQLN 470

Query: 464 CGIYRQEDLMQETIDKLAELKERYKRISIKDKGKVFNTDLLYAIEVGYGLDVAEAMVHSA 523
             ++R+ D M E +++L  +++R +   + D  + FNT  +  +E+   +  A A  ++A
Sbjct: 471 FSVFRRGDAMAEGLEQLKAIRKRLENAKLSDNSREFNTQRIECLELDNLMATAIATAYAA 530

Query: 524 ILRKESRGAHQRLDEGCTERDDVQFLKHSL 553
             R ESRGAH R  E   ERDD  +L HSL
Sbjct: 531 NFRTESRGAHSR--EDYLERDDENWLCHSL 558