Pairwise Alignments

Query, 297 a.a., DNA-binding transcriptional regulator OxyR from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., regulatory protein, LysR:LysR, substrate-binding protein from Pseudomonas syringae pv. syringae B728a

 Score =  116 bits (290), Expect = 7e-31
 Identities = 84/296 (28%), Positives = 136/296 (45%), Gaps = 11/296 (3%)

Query: 3   IRDFEYLVALADHKHFRKAAEACFVSQPTLSGQIRKLEDEIGTTLLERSSRRVLFTEAGL 62
           +R   YL+A+ADH +F +AAEA  VSQP LS QIR+LE  +G  L +R+ R V+ T+AG 
Sbjct: 15  LRHIRYLLAVADHGNFTRAAEALHVSQPALSQQIRQLESSLGVQLFDRTRRSVVPTDAGR 74

Query: 63  QLVDQAKKILSEVKTFKDMANQQTGAMTGPLHIGFIPTLGPYLLPKIIPTLKERFPELEL 122
             +D A++ L E+   K   N  +    G L +G  PT   YL+  +I      +P + +
Sbjct: 75  VYLDHARRCLLELDAGKRALNDVSDLSRGQLRLGVTPTFSEYLIAPLIDRFSALYPGVAI 134

Query: 123 YLHEAQTNQLVRQLEEGKLDCLVLASVEETAPFKEIELYNEVLSI--AVPCDHAWAARDE 180
            L E    Q+   L    LD  +  +           L++E L +  A P     AA   
Sbjct: 135 ILTELPLEQITEALISDALDLAIGFAGSHAVEIDSQPLFDEQLCLVMAKPASEKQAA--- 191

Query: 181 VDMLELKGKTVLALGDGHCLRDQALGFCFAAGAKDDERFKATSLETLRNMVAAGAGITLL 240
           + + +L+      L  G   R     +C     K     +A S+  L  +VA G   T+L
Sbjct: 192 LTLEDLQALRFALLAPGFATRQLLDAWCQMQNFKPIIGLEANSIAILLKVVAQGRMATIL 251

Query: 241 PELALPEDKTKDGVCYLRAVNPIPSRRLVLAYRPG---SPLRQRFEQLAEVIKHRL 293
           P+  +   + + G+C ++ +  +P R + L  R     S   + F +L   I+ ++
Sbjct: 252 PDAIV---RKQPGLCEVQTIPALPGRTVALLRRKNGYQSAAAKAFAKLVSDIRTKI 304