Pairwise Alignments

Query, 297 a.a., DNA-binding transcriptional regulator OxyR from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., transcriptional regulator, LysR family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  160 bits (405), Expect = 3e-44
 Identities = 97/290 (33%), Positives = 155/290 (53%), Gaps = 2/290 (0%)

Query: 3   IRDFEYLVALADHKHFRKAAEACFVSQPTLSGQIRKLEDEIGTTLLERSSRRVLFTEAGL 62
           +R  ++LVA+ +  HFR+AAE   V+QP+LS QI+ LED +G  L+ER    V  T+ G 
Sbjct: 6   LRQLQFLVAIEETAHFRRAAERVGVTQPSLSAQIQNLEDTLGVALVERGRGGVRLTQVGR 65

Query: 63  QLVDQAKKILSEVKTFKDMANQQTGAMTGPLHIGFIPTLGPYLLPKIIPTLKERFPELEL 122
           ++V +A++IL +V++  D A      + G + +G   TLGPYLLP ++  L    P+L +
Sbjct: 66  EVVLRARRILDDVQSLVDFAGTARDGVVGTIRLGAKATLGPYLLPHVVGALHAAHPDLRI 125

Query: 123 YLHEAQTNQLVRQLEEGKLDCLVLASVEETAPFKEIELYNEVLSIAVPCDHAWAARDEVD 182
           Y+ E     L + L  G+ D ++       A +    L+ E L +A+P DH    ++ + 
Sbjct: 126 YIREDAPRLLEQDLARGEHDVILTQLPVTGADYTTARLFREPLLLALPADHPLLDKEVLR 185

Query: 183 MLELKGKTVLALGDGHCLRDQALGFCFAAGAKDDERFKATSLETLRNMVAAGAGITLLPE 242
             +L G+ VL+L   + L DQ    C   GA+    ++ TSL+ LR MV  G GIT LP 
Sbjct: 186 PRDLAGEQVLSLSPAYHLHDQITAICQQTGAQLARDYEGTSLDALRQMVGMGMGITFLPA 245

Query: 243 LAL-PEDKTKDGVCYLRAVNPIPSRRLV-LAYRPGSPLRQRFEQLAEVIK 290
           L +  E + +     +R ++  P  R V L +R  +       Q+A+VI+
Sbjct: 246 LYVRSEIEGRGAEVVVRRLSGAPIARSVGLVWRTRAGRTGANLQIAQVIR 295