Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., Penicillin-binding protein 1A from Synechococcus elongatus PCC 7942

 Score =  177 bits (449), Expect = 2e-48
 Identities = 114/341 (33%), Positives = 177/341 (51%), Gaps = 13/341 (3%)

Query: 3   PQLNRDSPVKFIKRLLVFSLICIILGVTTIFGFYFYVKSDLPDVATLRDVQLQTPMQVFS 62
           PQL R    +     LV+    I +G        F    +LPDV  LR         ++ 
Sbjct: 7   PQLPRPRSRRKWPLRLVYGSSAIAIGAVLGLALSF---RNLPDVRLLRRYVPSQTTYIYD 63

Query: 63  QDGKLIAQF-GEKRRIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLAS 121
            +G+LIA    E  R  + L ++  +L ++V+A EDS +Y+H G +PIGI RA  A  +S
Sbjct: 64  INGELIAALHDEANRETVPLNQISPKLQQSVLAIEDSNFYDHPGINPIGIGRAIVANFSS 123

Query: 122 GSASQGASTITQQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGY 181
           G   +G ST+T QL +N FL+ ++   RK+ E  +A+ +EQ++SK  ILELYLN++Y G 
Sbjct: 124 GGVVEGGSTLTMQLVKNLFLTPDRNFGRKLSEAVLALRLEQVISKDRILELYLNQVYWGR 183

Query: 182 RSYGVGAAAQAYFGKEVKDLTLGEIALIAGLPKAPSTMNPI--------YSVERATNRRN 233
             YGV  A+++YF K   +L   E + +AGL  AP    P           +ERA  R+ 
Sbjct: 184 NLYGVEMASRSYFNKSAANLDWAEASFLAGLIAAPEFYTPFDERDRLSPQRLERAKERQR 243

Query: 234 VVLQRMLDEKYITKAEYDAARAEPVLPKYHGAEIELNAPYVAEIARAWMVERYGEEAAYT 293
           +VLQR+++   ++ +   AA AEP+      +    +APYV++     + +++G  A   
Sbjct: 244 LVLQRLVEIGQLSPSAASAAAAEPLKFGEISSFRPSSAPYVSDAVIQELAQQFGRSAVVQ 303

Query: 294 SGMNVYTTVDSKLQRAANQAAINNLLAYDERHGYRGAEKEL 334
            G+ V TT+D ++QR A +    N    + R G R  E  L
Sbjct: 304 GGLRVQTTIDLRMQRLAEKVIQEN-YQRNRRAGLRADEMAL 343



 Score =  141 bits (355), Expect = 1e-37
 Identities = 97/339 (28%), Positives = 155/339 (45%), Gaps = 58/339 (17%)

Query: 444 AFVAMNPENGAVTALVGGFNFVHNKFNRATQSVRQVGSSIKPFIYSAALNKG-LTLATLI 502
           A VA++P    + A+VGG ++  +++NR TQ+ RQ GS+ KPF++ AAL  G     + I
Sbjct: 342 ALVAIDPRTHFIKAMVGGVDYRTSQYNRVTQARRQPGSAFKPFVFYAALATGKYRPNSSI 401

Query: 503 NDAPINQWDESQGTAWRPKNSPPTYTGPTRLRIGLAQSKNVMAVRVLREVGLDETREYLT 562
            D P+    +     + P+N   ++ G   L   LAQS+N+ AVR+ + VGLD   E   
Sbjct: 402 ADTPVTY--QLGAETYSPQNYDRSFAGNMSLTSALAQSRNIPAVRLGQTVGLDRVIEICR 459

Query: 563 RFGFKLDQLPRSETIALGAGSLTPVQMAQGFSVFANNGYFVEPFYISRVENPFGN--IEF 620
           R G      P   ++ LGA  +TP+++   ++  A+ G++  P  I +V +  G   ++ 
Sbjct: 460 RIGISSPMQP-VVSLPLGAIGVTPLELTNAYATLASGGWYAPPTLILQVRDSQGRRLLDH 518

Query: 621 SAEPKVVCHRECSSELDEFAEQDAASPYAPKVISEQNAFLTREMLYSNIWGGGEWSSDTG 680
           +  P+     +  ++L++  +    S                                  
Sbjct: 519 TPRPQPELQSKAVAQLNQMMQAVVTS---------------------------------- 544

Query: 681 WNGTGWRAQALKRRDIGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDDHSRNLGKTAPNR 740
             GTG  AQ    R + GKTGTT+D +D W+ GY P +    W+G DD+S+         
Sbjct: 545 --GTGRAAQF--NRPVAGKTGTTSDERDIWFVGYTPDLAASVWLGNDDNSK--------- 591

Query: 741 NIEDDVSGAESGGKTALPAWVEFMSLALQDVPVQQKAVP 779
                + G  +GG  A P W EFM  AL   PV+    P
Sbjct: 592 -----IGGGATGGAIAAPIWREFMQQALAQQPVESFPKP 625