Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 651 a.a., Penicillin-binding protein 1A (NCBI) from Rhodospirillum rubrum S1H

 Score =  193 bits (491), Expect = 2e-53
 Identities = 114/308 (37%), Positives = 188/308 (61%), Gaps = 14/308 (4%)

Query: 16  RLLVFSLICIILGVTTIFGFYFYVKSDLPDVATLRDVQLQTPMQVFSQDGKLIAQFGEKR 75
           RL++  +I +++G+    G   +   DLPD  T  +V  +  + + + DG  +A FG+ +
Sbjct: 76  RLMLVGVIWMVIGLA---GVVVWFGHDLPDPVTSANVTRRPSVTLLAADGSQLASFGDIQ 132

Query: 76  RIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLASGSASQGASTITQQL 135
              ++  ++P+ L+ A++ATED R+++H+G D +GI RA+   L +G   QG ST+TQQ+
Sbjct: 133 GDTVRTSDVPRALVLAILATEDRRFFKHFGLDLVGIARASVVNLRAGRVVQGGSTLTQQV 192

Query: 136 ARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGYRSYGVGAAAQAYFG 195
           A+N FL++++   RK++E+ +A+ +EQ  +K +IL LYLN++YLG  ++GV AAA+ YF 
Sbjct: 193 AKNLFLTHDRTFKRKIQEVLLALWLEQTFTKDQILSLYLNRVYLGAGTHGVDAAARRYFD 252

Query: 196 KEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVLQRMLDEKYITK--AEYDAA 253
           + V  + L + AL+AGLPKAPS +NP+ + + +  R   VLQ M++ K IT   A+  AA
Sbjct: 253 QPVGQINLYQAALLAGLPKAPSRLNPVTNPDGSRVRTLQVLQNMVEAKMITPALAKQAAA 312

Query: 254 RAEPVLPKYHGAEIELNAPYVAEIARAWMVERYGEEAA-YTSGMNVYTTVDSKLQRAANQ 312
            A+  +P   GA       Y A+    W++ER  + A      + V TT+D   QR+A +
Sbjct: 313 LADGAIP---GARRGGMGSYFAD----WILERVDDFAGPRDRDLIVRTTLDPVQQRSA-E 364

Query: 313 AAINNLLA 320
           AA+  LLA
Sbjct: 365 AAVAGLLA 372



 Score =  128 bits (322), Expect = 9e-34
 Identities = 100/314 (31%), Positives = 142/314 (45%), Gaps = 51/314 (16%)

Query: 421 VRPRTQDGAIT---AWKLTQVPNANTAFVAMNPENGAVTALVGGFNFVHNKFNRATQSVR 477
           V+ R+ + A+    A K   +  +  A VA+ P+ GAVTA+VGG +   + FNRA Q+ R
Sbjct: 358 VQQRSAEAAVAGLLAEKGAAMKASQAALVALAPD-GAVTAMVGGRDHATSPFNRAAQARR 416

Query: 478 QVGSSIKPFIYSAALNKGLTLATLINDAPINQWDESQGTAWRPKNSPPTYTGPTRLRIGL 537
           Q GS+ KPF++ A L  GLT +T+++DAPI          W P N    Y G   L    
Sbjct: 417 QPGSAFKPFVFLAGLEAGLTPSTMMDDAPITV------NGWSPGNYKDKYKGRVSLTQAF 470

Query: 538 AQSKNVMAVRVLREVGLDETREYLTRFGFKLDQLPRSETIALGAGSLTPVQMAQGFSVFA 597
           AQS N +AVRV    G     +   R G  +  L    +IALG   ++P+ +   ++ FA
Sbjct: 471 AQSLNTVAVRVSETAGRGAVVKVAHRLGV-IGSLSPLPSIALGVFEVSPLDLTAAYAPFA 529

Query: 598 NNGYFVEPFYISRVENPFGNIEFSAE---PKVVCHRECSSELDEFAEQDAASPYAPKVIS 654
           N GY V P  I  + +  G + +  +   P+ V   E +  +D              V+S
Sbjct: 530 NGGYAVVPHGILSIADRDGGLLYERQDSGPRRVVAPELARSMDTMLGA---------VVS 580

Query: 655 EQNAFLTREMLYSNIWGGGEWSSDTGWNGTGWRAQALKRRDIGGKTGTTNDSKDAWYNGY 714
                          WG G             RA  L  R   GKTGT+   +DAW+ GY
Sbjct: 581 ---------------WGTG-------------RAAGLPDRTARGKTGTSQGYRDAWFVGY 612

Query: 715 APGIVGVAWVGFDD 728
           A   +   WVG DD
Sbjct: 613 AGKTLAGVWVGNDD 626