Pairwise Alignments

Query, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

Subject, 750 a.a., Penicillin-binding protein 1A (NCBI) from Rhodospirillum rubrum S1H

 Score =  169 bits (429), Expect = 4e-46
 Identities = 111/279 (39%), Positives = 153/279 (54%), Gaps = 22/279 (7%)

Query: 64  DGKLIAQFGEKRRIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLASGS 123
           +G ++A  G     P+ L EMP  L+ AVIA ED R+ +H+G DP GI RA +  L SG 
Sbjct: 81  EGTVVATRGVTAGRPVALAEMPASLVNAVIAFEDRRFRDHWGVDPRGIARAIWVNLRSGG 140

Query: 124 ASQGASTITQQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGYRS 183
            +QGAST+TQQL +N  L+ EK   RK++E  +A+ IE+ L+K EILE YLN +YLG  S
Sbjct: 141 RTQGASTLTQQLVKNTLLTPEKTFTRKIQEAMLALWIERKLTKDEILERYLNSLYLGAGS 200

Query: 184 YGVGAAAQAYFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVLQRMLDEK 243
           YGV AAA+ YF K V DL+L E A+IAGL +AP+   P  +++ A  R  +VL  M D+ 
Sbjct: 201 YGVDAAARRYFNKPVTDLSLAESAMIAGLIQAPARTGPTTALDVARQRAELVLDVMRDQG 260

Query: 244 YITKAEYDAARAEPV--------LPKYHGAEIELNAPYVAEIARAWMVERYGEEAAYTSG 295
            I   E   A+A P         LP Y        + ++A+ AR  +    G+       
Sbjct: 261 LIGADEATWAKAHPASLAVPPVELPAYGAV-----SDWIADEARKALGPLSGD------- 308

Query: 296 MNVYTTVDSKLQRAANQAAINNLLAYDERHGYRGAEKEL 334
             V +T+D +LQ  A Q     + A  E  G R  +  L
Sbjct: 309 FLVVSTLDRRLQVLAQQTIQEGMAA--EGAGLRATQAAL 345



 Score = 97.1 bits (240), Expect = 3e-24
 Identities = 99/329 (30%), Positives = 137/329 (41%), Gaps = 68/329 (20%)

Query: 444 AFVAMNPENGAVTALVGGFNFVHNKFNRATQSVRQVGSSIKPFIYSAALNKGLTLATLIN 503
           A VAM P+ G V A+VGG ++  ++FNRA Q+ RQ GS  K F+Y  AL+        I+
Sbjct: 344 ALVAMAPD-GRVLAMVGGRDYQESQFNRAVQARRQPGSIFKLFVYLTALSNNWRPDDPID 402

Query: 504 DAPINQWDESQGTAWRPKN-SPPTYTGPTRLRIGLAQSKNVMAVRVLREVGLDETREYLT 562
           D P+          W P+N       G   LR+  A S N+ AVR+   VG +       
Sbjct: 403 DTPLTI------DGWSPENYGGGAGHGSVPLRVAFAHSYNLAAVRLQEAVGREAVIATAR 456

Query: 563 RFGFKLDQLPRSETIALGAGSLTPVQMAQGFSVFANNGYFVEPFYISRVENPFGNIEFSA 622
             G K D L    ++ALG    T + +   F+  A +   V+P  I  +  P        
Sbjct: 457 SMGLK-DDLQPLPSLALGTFPATLLDLTSAFAAVAADRATVQPRVIEVLRTP-------- 507

Query: 623 EPKVVCHRECSSELDEFAEQDAASPY-APKVISEQNAFLTREMLYSNIWGGGEWSSDTGW 681
                     S E+     Q   +P+     +   NA +T+                   
Sbjct: 508 ---------GSGEIRPPVRQSGRAPWPRASALDLLNAVVTQ------------------- 539

Query: 682 NGTGWRAQALKRRDIGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDDHSRNLGKTAPNRN 741
            GTG RA AL      GKTGTT D++DAW+ G+A  +V   WVG DD             
Sbjct: 540 -GTG-RAAALGVPTY-GKTGTTQDNRDAWFIGFAGNLVIGVWVGNDD------------- 583

Query: 742 IEDDVSGAESGGKTALPA--WVEFMSLAL 768
            E  ++G   GG   LPA  W  F + AL
Sbjct: 584 -ETPMTGISGGG---LPAKLWQSFAARAL 608